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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_X0207
AT1G13380
Q9FX59
35.2
not assigned.unknown
0.98221491
0.001587382
estExt_Genewise1_v1.C_LG_IX0295
AT2G27510
Q9ZQG8
7.3
OPP.electron transfer
0.985063907
0.002062693
ATFD3 (FERREDOXIN 3); electron carrier
eugene3.00041113
AT5G61170
Q9FNP8
29.2.1.2.1.19
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S19
0.985821931
0.002463629
40S ribosomal protein S19 (RPS19C)
grail3.0014029601
AT4G00830
Q9ASP6
27.4
RNA.RNA binding
0.987290047
0.000413632
RNA recognition motif (RRM)-containing protein
gw1.I.2863.1
AT5G40770
O04331
31.2
cell.division
0.987397008
0.000878689
ATPHB3 (PROHIBITIN 3)
prohibitin 3
estExt_fgenesh4_pm.C_LG_VI0643
AT5G35530
Q9FJA6
29.2.1.2.1.3
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3
0.987683174
0.00104036
40S ribosomal protein S3 (RPS3C)
grail3.0016015702
AT5G27700
Q3E902
29.2.1.2.1.21
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S21
0.987774056
0.001607608
40S ribosomal protein S21 (RPS21C)
estExt_Genewise1_v1.C_LG_X1818
AT4G00430
Q39196
34.19.1
transport.Major Intrinsic Proteins.PIP
0.989642247
0.003329864
TMP-C (plasma membrane intrinsic protein 1;4); water channel
a member of the plasma membrane intrinsic protein subfamily PIP1.
gw1.VIII.2707.1
AT4G34670
Q42262
29.2.1.2.1.53
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A
0.991725056
0.002158369
40S ribosomal protein S3A (RPS3aB)
estExt_fgenesh4_pg.C_LG_X2159
AT3G13580
Q9LHP1
29.2.1.2.2.7
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7
0.992052977
0.002408604
60S ribosomal protein L7 (RPL7D)
gw1.IX.2337.1
AT4G34200
O49485
13.1.5.1.1
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase
0.992104853
0.003880839
EDA9 (embryo sac development arrest 9); NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase
fgenesh4_pm.C_LG_X000307
AT3G22750
Q9LUI6
29.4
protein.postranslational modification
0.992722059
0.001268453
protein kinase, putative
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