Species & Dataset
Experiment
Foliar Ozone Injury
-
Populus trichocarpa
-
Common name: Poplar cottonwood
-
Family: Salicaceae
-
Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
-
Tissue: Shoot leaves
-
Ozone concentration: 16.7 nL L-1 (Control)
-
93.1 nL L-1 (Treatment)
-
Ozone exposure: Whole experimental period
-
Sampling time: End of exposure period
-
Platform: Microarray
-
Year of study: 2010
-
Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
grail3.0001089401 | AT2G19740 | Q9SLL7 | 29.2.1.2.2.31 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L31 | 0.970926686 | 0.002773609 | 60S ribosomal protein L31 (RPL31A) | |
eugene3.00111242 | AT1G33120 | 29.2.1.2.2.9 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 | 0.972408037 | 0.001780764 | 60S ribosomal protein L9 (RPL90B) | ||
fgenesh4_pg.C_LG_III001872 | AT1G55210 | Q9C891 | 20.1.7 | stress.biotic.PR-proteins | 0.972927316 | 0.001726725 | disease resistance response | |
estExt_Genewise1_v1.C_49590001 | AT5G60670 | Q9FF52 | 29.2.1.2.2.12 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12 | 0.974000089 | 0.00156937 | 60S ribosomal protein L12 (RPL12C) | |
eugene3.00160539 | AT1G58170 | Q9C523 | 20.1.7 | stress.biotic.PR-proteins | 0.975014582 | 0.000850176 | disease resistance-responsive protein-related / dirigent protein-related | |
estExt_fgenesh4_pm.C_LG_IV0210 | AT3G02560 | Q9M885 | 29.2.1.2.1.7 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7 | 0.97519783 | 0.002287432 | 40S ribosomal protein S7 (RPS7B) | |
grail3.0031016901 | AT5G60490 | Q8LEE9 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | 0.976155986 | 0.000839591 | FLA12 (fasciclin-like arabinogalactan-protein 12) | |
eugene3.00070822 | AT1G56070 | 29.2.4 | protein.synthesis.elongation | 0.976184731 | 0.002223106 | LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding | encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. | |
gw1.158.134.1 | AT1G72370 | Q08682 | 29.2.1.2.1.31 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA | 0.977358468 | 0.001215767 | P40 (40S ribosomal protein SA); structural constituent of ribosome | acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. |
estExt_fgenesh4_pg.C_LG_I1918 | AT3G08580 | P31167 | 34.8 | transport.metabolite transporters at the envelope membrane | 0.979587054 | 0.003709255 | AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding | mitochondrial ADP/ATP carrier |
estExt_fgenesh4_pg.C_LG_VI0896 | AT3G08720 | Q39030 | 29.2.2 | protein.synthesis.ribosome biogenesis | 0.979955146 | 0.001142671 | ATPK19/ATPK2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 19, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase | Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins. |
gw1.VII.1776.1 | AT2G19540 | Q9ZUN8 | 33.99 | development.unspecified | 0.98207035 | 0.002262632 | transducin family protein / WD-40 repeat family protein |