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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0001089401
AT2G19740
Q9SLL7
29.2.1.2.2.31
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L31
0.970926686
0.002773609
60S ribosomal protein L31 (RPL31A)
eugene3.00111242
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
0.972408037
0.001780764
60S ribosomal protein L9 (RPL90B)
fgenesh4_pg.C_LG_III001872
AT1G55210
Q9C891
20.1.7
stress.biotic.PR-proteins
0.972927316
0.001726725
disease resistance response
estExt_Genewise1_v1.C_49590001
AT5G60670
Q9FF52
29.2.1.2.2.12
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12
0.974000089
0.00156937
60S ribosomal protein L12 (RPL12C)
eugene3.00160539
AT1G58170
Q9C523
20.1.7
stress.biotic.PR-proteins
0.975014582
0.000850176
disease resistance-responsive protein-related / dirigent protein-related
estExt_fgenesh4_pm.C_LG_IV0210
AT3G02560
Q9M885
29.2.1.2.1.7
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7
0.97519783
0.002287432
40S ribosomal protein S7 (RPS7B)
grail3.0031016901
AT5G60490
Q8LEE9
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
0.976155986
0.000839591
FLA12 (fasciclin-like arabinogalactan-protein 12)
eugene3.00070822
AT1G56070
29.2.4
protein.synthesis.elongation
0.976184731
0.002223106
LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding
encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.
gw1.158.134.1
AT1G72370
Q08682
29.2.1.2.1.31
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA
0.977358468
0.001215767
P40 (40S ribosomal protein SA); structural constituent of ribosome
acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
estExt_fgenesh4_pg.C_LG_I1918
AT3G08580
P31167
34.8
transport.metabolite transporters at the envelope membrane
0.979587054
0.003709255
AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding
mitochondrial ADP/ATP carrier
estExt_fgenesh4_pg.C_LG_VI0896
AT3G08720
Q39030
29.2.2
protein.synthesis.ribosome biogenesis
0.979955146
0.001142671
ATPK19/ATPK2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 19, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase
Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.
gw1.VII.1776.1
AT2G19540
Q9ZUN8
33.99
development.unspecified
0.98207035
0.002262632
transducin family protein / WD-40 repeat family protein
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