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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00181016
AT4G31985
29.2.1.2.2.39
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39
1.063160859
0.001650298
60S ribosomal protein L39 (RPL39C)
estExt_Genewise1_v1.C_LG_XIX2192
AT4G12600
Q9SU26
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
1.064781965
0.002359906
ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
eugene3.00121123
AT2G36620
Q42347
29.2.1.2.2.24
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L24
1.06495181
0.000627457
RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome
RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).
estExt_Genewise1_v1.C_LG_XVI2662
AT5G02960
P49201
29.2.1.2.1.23
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23
1.065712894
0.001644334
40S ribosomal protein S23 (RPS23B)
estExt_Genewise1_v1.C_LG_X2660
AT5G42300
Q9FGZ9
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
1.066149301
0.00170047
ubiquitin family protein
estExt_fgenesh4_pg.C_LG_III1207
AT5G42000
Q9FHY3
29.6
protein.folding
1.066705985
0.000475348
ORMDL family protein
estExt_fgenesh4_pg.C_LG_XV0862
AT1G72370
Q08682
29.2.1.2.1.31
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA
1.067103513
0.001405674
P40 (40S ribosomal protein SA); structural constituent of ribosome
acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
estExt_Genewise1_v1.C_LG_XIII3119
AT3G56340
Q9LYK9
29.2.1.2.1.26
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S26
1.067606839
0.001330089
40S ribosomal protein S26 (RPS26C)
eugene3.00060477
AT2G41840
P49688
29.2.1.2.1.2
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S2
1.068515233
0.001592202
40S ribosomal protein S2 (RPS2C)
estExt_Genewise1_v1.C_1330065
AT5G27700
Q3E902
29.2.1.2.1.21
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S21
1.069132494
0.001121734
40S ribosomal protein S21 (RPS21C)
estExt_fgenesh4_pm.C_1210019
AT2G36460
Q9SJQ9
4.1.10
glycolysis.cytosolic branch.aldolase
1.072890368
0.003099703
fructose-bisphosphate aldolase, putative
estExt_fgenesh4_pg.C_LG_IX0162
AT5G17920
O50008
13.1.3.4
amino acid metabolism.synthesis.aspartate family.methionine
0.968233318
0.002597016
ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase
Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
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