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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00570187
AT5G66760
O82663
8.1.7
TCA / org transformation.TCA.succinate dehydrogenase
1.048995427
0.000817011
SDH1-1 (Succinate dehydrogenase 1-1)
One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.
estExt_fgenesh4_pm.C_LG_IX0111
AT2G27720
P51407
29.2.1.2.2.82
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P2
1.049454957
0.003329855
60S acidic ribosomal protein P2 (RPP2A)
gw1.IV.611.1
AT4G39200
Q9T029
29.2.1.2.1.25
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25
1.049983814
0.000949789
40S ribosomal protein S25 (RPS25E)
eugene3.00021764
AT3G05560
Q9M9W1
29.2.1.2.2.22
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L22
1.050264306
0.001743785
60S ribosomal protein L22-2 (RPL22B)
gw1.V.3049.1
AT1G74040
Q9C550
13.1.4.4.1
amino acid metabolism.synthesis.branched chain group.leucine specific.2-isopropylmalate synthase
1.050663792
0.000895683
IMS1; 2-isopropylmalate synthase
Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).
grail3.0051005101
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
1.052181945
0.001276591
60S ribosomal protein L9 (RPL90B)
gw1.VII.3485.1
AT5G66760
O82663
8.1.7
TCA / org transformation.TCA.succinate dehydrogenase
1.05272857
0.00172141
SDH1-1 (Succinate dehydrogenase 1-1)
One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.
eugene3.00140720
AT3G05590
P42791
29.2.1.2.2.18
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18
1.052885331
0.000684867
RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Encodes cytoplasmic ribosomal protein L18.
grail3.3484000101
AT3G62870
Q9LZH9
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
1.057216174
0.000934915
60S ribosomal protein L7A (RPL7aB)
estExt_fgenesh4_pg.C_LG_VIII0110
AT5G64140
P34789
29.2.1.2.1.28
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S28
1.057537058
0.000713824
RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome
Encodes a putative ribosomal protein S28.
estExt_Genewise1_v1.C_LG_II4011
AT1G04480
Q593H7
29.2.1.2.2.23
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23
1.057803489
0.003097982
60S ribosomal protein L23 (RPL23A)
estExt_Genewise1_v1.C_LG_X5199
AT1G70600
P49637
29.2.1.2.2.527
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A
1.059435749
0.001041385
60S ribosomal protein L27A (RPL27aC)
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