Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00570187 | AT5G66760 | O82663 | 8.1.7 | TCA / org transformation.TCA.succinate dehydrogenase | 1.048995427 | 0.000817011 | SDH1-1 (Succinate dehydrogenase 1-1) | One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex. |
estExt_fgenesh4_pm.C_LG_IX0111 | AT2G27720 | P51407 | 29.2.1.2.2.82 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P2 | 1.049454957 | 0.003329855 | 60S acidic ribosomal protein P2 (RPP2A) | |
gw1.IV.611.1 | AT4G39200 | Q9T029 | 29.2.1.2.1.25 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25 | 1.049983814 | 0.000949789 | 40S ribosomal protein S25 (RPS25E) | |
eugene3.00021764 | AT3G05560 | Q9M9W1 | 29.2.1.2.2.22 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L22 | 1.050264306 | 0.001743785 | 60S ribosomal protein L22-2 (RPL22B) | |
gw1.V.3049.1 | AT1G74040 | Q9C550 | 13.1.4.4.1 | amino acid metabolism.synthesis.branched chain group.leucine specific.2-isopropylmalate synthase | 1.050663792 | 0.000895683 | IMS1; 2-isopropylmalate synthase | Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500). |
grail3.0051005101 | AT1G33120 | 29.2.1.2.2.9 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 | 1.052181945 | 0.001276591 | 60S ribosomal protein L9 (RPL90B) | ||
gw1.VII.3485.1 | AT5G66760 | O82663 | 8.1.7 | TCA / org transformation.TCA.succinate dehydrogenase | 1.05272857 | 0.00172141 | SDH1-1 (Succinate dehydrogenase 1-1) | One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex. |
eugene3.00140720 | AT3G05590 | P42791 | 29.2.1.2.2.18 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18 | 1.052885331 | 0.000684867 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome | Encodes cytoplasmic ribosomal protein L18. |
grail3.3484000101 | AT3G62870 | Q9LZH9 | 29.2.1.2.2.57 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A | 1.057216174 | 0.000934915 | 60S ribosomal protein L7A (RPL7aB) | |
estExt_fgenesh4_pg.C_LG_VIII0110 | AT5G64140 | P34789 | 29.2.1.2.1.28 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S28 | 1.057537058 | 0.000713824 | RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome | Encodes a putative ribosomal protein S28. |
estExt_Genewise1_v1.C_LG_II4011 | AT1G04480 | Q593H7 | 29.2.1.2.2.23 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23 | 1.057803489 | 0.003097982 | 60S ribosomal protein L23 (RPL23A) | |
estExt_Genewise1_v1.C_LG_X5199 | AT1G70600 | P49637 | 29.2.1.2.2.527 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A | 1.059435749 | 0.001041385 | 60S ribosomal protein L27A (RPL27aC) |