Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00061117 | AT1G70600 | P49637 | 29.2.1.2.2.527 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A | 1.031978305 | 0.00324456 | 60S ribosomal protein L27A (RPL27aC) | |
fgenesh4_pm.C_LG_IX000240 | AT4G39200 | Q9T029 | 29.2.1.2.1.25 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25 | 1.032456318 | 0.001040888 | 40S ribosomal protein S25 (RPS25E) | |
grail3.0100002702 | AT1G51680 | Q42524 | 16.2.1.3 | secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL | 1.033853122 | 0.000811321 | 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. |
estExt_fgenesh4_pg.C_LG_IX0440 | AT2G16430 | Q9SIV9 | 26.13 | misc.acid and other phosphatases | 1.03464068 | 0.001452189 | PAP10; acid phosphatase/ protein serine/threonine phosphatase | |
grail3.0011017901 | AT4G39830 | A0A1P8B4N7 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | 1.036203401 | 0.002414989 | L-ascorbate oxidase, putative | |
estExt_Genewise1_v1.C_1650011 | AT3G62870 | Q9LZH9 | 29.2.1.2.2.57 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A | 1.038866842 | 0.001201282 | 60S ribosomal protein L7A (RPL7aB) | |
grail3.0039026001 | AT5G63140 | Q9FMK9 | 26.13 | misc.acid and other phosphatases | 1.039263039 | 0.000697429 | ATPAP29/PAP29 (purple acid phosphatase 29); acid phosphatase/ protein serine/threonine phosphatase | |
estExt_fgenesh4_pm.C_LG_XVII0043 | AT5G48760 | Q9FKC0 | 29.2.1.2.2.513 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A | 1.041749925 | 0.002026452 | 60S ribosomal protein L13A (RPL13aD) | |
grail3.0049008501 | AT1G07920 | Q0WL56 | 29.2.4 | protein.synthesis.elongation | 1.045506132 | 0.002105473 | elongation factor 1-alpha / EF-1-alpha | |
estExt_fgenesh4_pm.C_660004 | AT2G27720 | P51407 | 29.2.1.2.2.82 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P2 | 1.047094953 | 0.001922875 | 60S acidic ribosomal protein P2 (RPP2A) | |
estExt_Genewise1_v1.C_LG_VIII2173 | AT1G68710 | Q9SX33 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 1.04757598 | 0.003137513 | haloacid dehalogenase-like hydrolase family protein | |
gw1.57.264.1 | AT4G36130 | Q42064 | 29.2.1.2.2.8 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L8 | 1.047946995 | 0.001690482 | 60S ribosomal protein L8 (RPL8C) |