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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00061117
AT1G70600
P49637
29.2.1.2.2.527
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A
1.031978305
0.00324456
60S ribosomal protein L27A (RPL27aC)
fgenesh4_pm.C_LG_IX000240
AT4G39200
Q9T029
29.2.1.2.1.25
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25
1.032456318
0.001040888
40S ribosomal protein S25 (RPS25E)
grail3.0100002702
AT1G51680
Q42524
16.2.1.3
secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL
1.033853122
0.000811321
4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase
encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.
estExt_fgenesh4_pg.C_LG_IX0440
AT2G16430
Q9SIV9
26.13
misc.acid and other phosphatases
1.03464068
0.001452189
PAP10; acid phosphatase/ protein serine/threonine phosphatase
grail3.0011017901
AT4G39830
A0A1P8B4N7
21.2.1
redox.ascorbate and glutathione.ascorbate
1.036203401
0.002414989
L-ascorbate oxidase, putative
estExt_Genewise1_v1.C_1650011
AT3G62870
Q9LZH9
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
1.038866842
0.001201282
60S ribosomal protein L7A (RPL7aB)
grail3.0039026001
AT5G63140
Q9FMK9
26.13
misc.acid and other phosphatases
1.039263039
0.000697429
ATPAP29/PAP29 (purple acid phosphatase 29); acid phosphatase/ protein serine/threonine phosphatase
estExt_fgenesh4_pm.C_LG_XVII0043
AT5G48760
Q9FKC0
29.2.1.2.2.513
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A
1.041749925
0.002026452
60S ribosomal protein L13A (RPL13aD)
grail3.0049008501
AT1G07920
Q0WL56
29.2.4
protein.synthesis.elongation
1.045506132
0.002105473
elongation factor 1-alpha / EF-1-alpha
estExt_fgenesh4_pm.C_660004
AT2G27720
P51407
29.2.1.2.2.82
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P2
1.047094953
0.001922875
60S acidic ribosomal protein P2 (RPP2A)
estExt_Genewise1_v1.C_LG_VIII2173
AT1G68710
Q9SX33
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
1.04757598
0.003137513
haloacid dehalogenase-like hydrolase family protein
gw1.57.264.1
AT4G36130
Q42064
29.2.1.2.2.8
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L8
1.047946995
0.001690482
60S ribosomal protein L8 (RPL8C)
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