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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00070346
AT1G73260
Q8RXD5
20.1.7.6.1
stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor
4.372610679
0.000549868
trypsin and protease inhibitor family protein / Kunitz family protein
estExt_Genewise1_v1.C_LG_XVI3242
AT2G37770
Q0PGJ6
3.5
minor CHO metabolism.others
1.664496372
0.001768656
oxidoreductase
estExt_Genewise1_v1.C_LG_XIV2782
AT3G63010
Q9LYC1
17.6.2
hormone metabolism.gibberelin.signal transduction
1.675410238
0.003971384
ATGID1B/GID1B (GA INSENSITIVE DWARF1B)
Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.
fgenesh4_pm.C_LG_XV000479
AT5G52470
Q9FEF8
27.1
RNA.processing
1.696377524
0.000299527
FIB1 (FIBRILLARIN 1)
encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.
estExt_Genewise1_v1.C_LG_IX3674
AT3G07600
Q9SSF0
15
metal handling
1.697540864
0.001132159
heavy-metal-associated domain-containing protein
eugene3.00100655
AT2G27380
Q9ZQI0
35.1.42
not assigned.no ontology.proline rich family
1.706860996
0.000443601
ATEPR1 (Arabidopsis thaliana extensin proline-rich 1)
Encodes an extensin like gene involved in seed germination.
grail3.19938000101
AT3G51240
Q9S818
16.8.3.2
secondary metabolism.flavonoids.dihydroflavonols.flavanone 3-hydroxylase
1.723826327
0.000985708
F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase
Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.
grail3.0036009801
AT2G29420
Q9ZW24
26.9
misc.glutathione S transferases
1.724551335
0.002865151
ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.
estExt_Genewise1_v1.C_LG_XIV0250
AT1G02930
P42760
26.9
misc.glutathione S transferases
1.750390524
0.002383737
ATGSTF6 (EARLY RESPONSIVE TO DEHYDRATION 11); glutathione transferase
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
estExt_fgenesh4_pm.C_LG_XIX0276
AT1G26910
Q08770
29.2.1.2.2.10
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10
1.761304196
0.000629799
60S ribosomal protein L10 (RPL10B)
grail3.5873000103
AT5G61030
Q9FNR1
27.4
RNA.RNA binding
1.768032569
0.000230029
GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
grail3.0024029101
AT2G26190
O64851
30.3
signalling.calcium
1.776028609
0.000867401
calmodulin-binding family protein
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