Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00061249 | AT4G31985 | 29.2.1.2.2.39 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39 | 1.022100978 | 0.001472681 | 60S ribosomal protein L39 (RPL39C) | ||
fgenesh4_pm.C_LG_XVI000023 | AT3G02870 | Q9M8S8 | 3.4.5 | minor CHO metabolism.myo-inositol.inositol phosphatase | 1.022615791 | 0.000290926 | VTC4; 3(2),5-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase | Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis |
gw1.VIII.659.1 | AT3G04920 | Q9SS17 | 29.2.1.2.1.24 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S24 | 1.023151963 | 0.000530121 | 40S ribosomal protein S24 (RPS24A) | |
estExt_Genewise1_v1.C_LG_I4958 | AT3G15050 | Q9LKA0 | 30.3 | signalling.calcium | 1.024422791 | 0.001121703 | IQD10 (IQ-domain 10); calmodulin binding | |
estExt_Genewise1_v1.C_660486 | AT2G27530 | P59230 | 29.2.1.2.2.510 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A | 1.025177895 | 0.002111555 | 60S ribosomal protein L10A (RPL10aB) | |
gw1.82.38.1 | AT5G61030 | Q9FNR1 | 27.4 | RNA.RNA binding | 1.025238936 | 0.000476595 | GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding | encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. |
estExt_Genewise1_v1.C_LG_XII0064 | AT3G17980 | Q9LVH4 | 35.1.19 | not assigned.no ontology.C2 domain-containing protein | 1.027609819 | 0.002991353 | C2 domain-containing protein | |
eugene3.00410102 | AT4G09510 | Q67XD9 | 2.2.1.3.1 | major CHO metabolism.degradation.sucrose.invertases.neutral | 1.028265122 | 0.001711233 | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative | |
eugene3.00870016 | AT1G80490 | Q0WV90 | 33.99 | development.unspecified | 1.028699733 | 0.002061006 | TPR1 (TOPLESS-RELATED 1) | |
estExt_fgenesh4_pg.C_1200093 | AT5G39740 | P49227 | 29.2.1.2.2.5 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L5 | 1.028979343 | 0.003028787 | 60S ribosomal protein L5 (RPL5B) | |
grail3.0040028802 | AT4G24220 | Q9STX2 | 33.99 | development.unspecified | 1.030095039 | 0.001967317 | VEP1 (VEIN PATTERNING 1) | encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding. |
estExt_Genewise1_v1.C_1180211 | AT3G10950 | Q9SRK6 | 29.2.1.2.2.537 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37A | 1.030343516 | 0.002223572 | 60S ribosomal protein L37a (RPL37aB) |