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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00061249
AT4G31985
29.2.1.2.2.39
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39
1.022100978
0.001472681
60S ribosomal protein L39 (RPL39C)
fgenesh4_pm.C_LG_XVI000023
AT3G02870
Q9M8S8
3.4.5
minor CHO metabolism.myo-inositol.inositol phosphatase
1.022615791
0.000290926
VTC4; 3(2),5-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase
Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis
gw1.VIII.659.1
AT3G04920
Q9SS17
29.2.1.2.1.24
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S24
1.023151963
0.000530121
40S ribosomal protein S24 (RPS24A)
estExt_Genewise1_v1.C_LG_I4958
AT3G15050
Q9LKA0
30.3
signalling.calcium
1.024422791
0.001121703
IQD10 (IQ-domain 10); calmodulin binding
estExt_Genewise1_v1.C_660486
AT2G27530
P59230
29.2.1.2.2.510
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A
1.025177895
0.002111555
60S ribosomal protein L10A (RPL10aB)
gw1.82.38.1
AT5G61030
Q9FNR1
27.4
RNA.RNA binding
1.025238936
0.000476595
GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
estExt_Genewise1_v1.C_LG_XII0064
AT3G17980
Q9LVH4
35.1.19
not assigned.no ontology.C2 domain-containing protein
1.027609819
0.002991353
C2 domain-containing protein
eugene3.00410102
AT4G09510
Q67XD9
2.2.1.3.1
major CHO metabolism.degradation.sucrose.invertases.neutral
1.028265122
0.001711233
beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative
eugene3.00870016
AT1G80490
Q0WV90
33.99
development.unspecified
1.028699733
0.002061006
TPR1 (TOPLESS-RELATED 1)
estExt_fgenesh4_pg.C_1200093
AT5G39740
P49227
29.2.1.2.2.5
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L5
1.028979343
0.003028787
60S ribosomal protein L5 (RPL5B)
grail3.0040028802
AT4G24220
Q9STX2
33.99
development.unspecified
1.030095039
0.001967317
VEP1 (VEIN PATTERNING 1)
encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.
estExt_Genewise1_v1.C_1180211
AT3G10950
Q9SRK6
29.2.1.2.2.537
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37A
1.030343516
0.002223572
60S ribosomal protein L37a (RPL37aB)
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