Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pg.C_LG_VII0552 | AT3G49910 | P51414 | 29.2.1.2.2.26 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26 | 1.163466077 | 0.001103929 | 60S ribosomal protein L26 (RPL26A) | |
estExt_Genewise1_v1.C_LG_II3994 | AT4G18100 | P49211 | 29.2.1.2.2.32 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L32 | 1.165292267 | 0.000377924 | 60S ribosomal protein L32 (RPL32A) | |
estExt_Genewise1_v1.C_LG_XII0631 | AT1G02780 | Q9SRX2 | 29.2.1.2.2.19 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L19 | 1.166347302 | 0.000706322 | EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome | |
gw1.XI.1249.1 | AT4G04720 | Q9ZSA2 | 30.3 | signalling.calcium | 1.166791409 | 0.001416624 | CPK21 (calcium-dependent protein kinase 21); calcium- and calmodulin-dependent protein kinase/ kinase | member of Calcium Dependent Protein Kinase |
eugene3.00081749 | AT1G21740 | Q9XI02 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 1.16992999 | 0.001515218 | ||
estExt_fgenesh4_pg.C_410046 | AT4G12600 | Q9SU26 | 29.2.1.2.2.57 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A | 1.171236676 | 0.000534745 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | |
fgenesh4_pg.C_scaffold_57000218 | AT1G19300 | Q9LN68 | 10.3.2 | cell wall.hemicellulose synthesis.glucuronoxylan | 1.171804295 | 0.000187179 | GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | Encodes a protein with putative galacturonosyltransferase activity. |
estExt_fgenesh4_kg.C_LG_IV0063 | AT2G16600 | Q38900 | 31.3.1 | cell.cycle.peptidylprolyl isomerase | 1.174528306 | 0.001640929 | ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase | Encodes cytosolic cyclophilin ROC3. |
estExt_fgenesh4_pg.C_LG_III1155 | AT2G04620 | Q9SI03 | 34.12 | transport.metal | 1.175443799 | 0.002875749 | cation efflux family protein | |
estExt_fgenesh4_kg.C_LG_II0025 | AT2G34480 | P51418 | 29.2.1.2.2.518 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18A | 1.020046685 | 0.000888503 | 60S ribosomal protein L18A (RPL18aB) | |
grail3.0049017902 | AT1G07770 | A0A178W5N5 | 29.2.1.2.1.515 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15A | 1.020084568 | 0.002908933 | RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome | Encodes cytoplasmic ribosomal protein S15a. |
gw1.XI.1745.1 | AT4G16340 | Q8SAB7 | 31.1 | cell.organisation | 1.02151375 | 0.003473612 | SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor | mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein |