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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pg.C_LG_VII0552
AT3G49910
P51414
29.2.1.2.2.26
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26
1.163466077
0.001103929
60S ribosomal protein L26 (RPL26A)
estExt_Genewise1_v1.C_LG_II3994
AT4G18100
P49211
29.2.1.2.2.32
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L32
1.165292267
0.000377924
60S ribosomal protein L32 (RPL32A)
estExt_Genewise1_v1.C_LG_XII0631
AT1G02780
Q9SRX2
29.2.1.2.2.19
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L19
1.166347302
0.000706322
EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome
gw1.XI.1249.1
AT4G04720
Q9ZSA2
30.3
signalling.calcium
1.166791409
0.001416624
CPK21 (calcium-dependent protein kinase 21); calcium- and calmodulin-dependent protein kinase/ kinase
member of Calcium Dependent Protein Kinase
eugene3.00081749
AT1G21740
Q9XI02
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
1.16992999
0.001515218
estExt_fgenesh4_pg.C_410046
AT4G12600
Q9SU26
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
1.171236676
0.000534745
ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
fgenesh4_pg.C_scaffold_57000218
AT1G19300
Q9LN68
10.3.2
cell wall.hemicellulose synthesis.glucuronoxylan
1.171804295
0.000187179
GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups
Encodes a protein with putative galacturonosyltransferase activity.
estExt_fgenesh4_kg.C_LG_IV0063
AT2G16600
Q38900
31.3.1
cell.cycle.peptidylprolyl isomerase
1.174528306
0.001640929
ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase
Encodes cytosolic cyclophilin ROC3.
estExt_fgenesh4_pg.C_LG_III1155
AT2G04620
Q9SI03
34.12
transport.metal
1.175443799
0.002875749
cation efflux family protein
estExt_fgenesh4_kg.C_LG_II0025
AT2G34480
P51418
29.2.1.2.2.518
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18A
1.020046685
0.000888503
60S ribosomal protein L18A (RPL18aB)
grail3.0049017902
AT1G07770
A0A178W5N5
29.2.1.2.1.515
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15A
1.020084568
0.002908933
RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome
Encodes cytoplasmic ribosomal protein S15a.
gw1.XI.1745.1
AT4G16340
Q8SAB7
31.1
cell.organisation
1.02151375
0.003473612
SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor
mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein
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