Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00012536 | AT3G27260 | Q9LK27 | 27.3.52 | RNA.regulation of transcription.Global transcription factor group | 1.126081211 | 0.002068701 | GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding | Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain |
grail3.0019011601 | AT2G27530 | P59230 | 29.2.1.2.2.510 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A | 1.130813429 | 0.001283667 | 60S ribosomal protein L10A (RPL10aB) | |
fgenesh4_pm.C_LG_IX000091 | AT5G22770 | Q8LPL6 | 31.4 | cell.vesicle transport | 1.133478298 | 0.00270556 | ALPHA-ADR (ALPHA-ADAPTIN); binding / structural molecule | |
eugene3.00280289 | AT3G52990 | A8MR07 | 4.1.14 | glycolysis.cytosolic branch.pyruvate kinase (PK) | 1.135433708 | 0.00101944 | pyruvate kinase, putative | |
estExt_Genewise1_v1.C_1230260 | AT3G02560 | Q9M885 | 29.2.1.2.1.7 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7 | 1.135564344 | 0.000698042 | 40S ribosomal protein S7 (RPS7B) | |
estExt_fgenesh4_pg.C_LG_III0669 | AT5G39850 | Q9FLF0 | 29.2.1.2.1.9 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9 | 1.139115252 | 0.000506861 | 40S ribosomal protein S9 (RPS9C) | |
estExt_fgenesh4_pm.C_LG_XII0164 | AT1G18080 | O24456 | 33.99 | development.unspecified | 1.147952304 | 0.001517642 | ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding | Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. |
estExt_Genewise1_v1.C_LG_III0629 | AT1G27350 | 35.2 | not assigned.unknown | 1.155042276 | 0.002015248 | |||
estExt_fgenesh4_pg.C_280257 | AT3G10050 | Q9ZSS6 | 13.1.4.5.1 | amino acid metabolism.synthesis.branched chain group.isoleucine specific.threonine ammonia-lyase | 1.155188808 | 0.001639034 | OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase | first enzyme in the biosynthetic pathway of isoleucine |
estExt_Genewise1_v1.C_LG_XI0817 | AT1G33120 | 29.2.1.2.2.9 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 | 1.15681301 | 0.00088319 | 60S ribosomal protein L9 (RPL90B) | ||
estExt_Genewise1_v1.C_LG_VIII1205 | AT1G07920 | Q0WL56 | 29.2.4 | protein.synthesis.elongation | 1.157699144 | 0.000629897 | elongation factor 1-alpha / EF-1-alpha | |
eugene3.00011799 | AT1G74050 | Q9C9C5 | 29.2.1.2.2.6 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6 | 1.161068323 | 0.000277339 | 60S ribosomal protein L6 (RPL6C) |