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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00012536
AT3G27260
Q9LK27
27.3.52
RNA.regulation of transcription.Global transcription factor group
1.126081211
0.002068701
GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding
Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain
grail3.0019011601
AT2G27530
P59230
29.2.1.2.2.510
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A
1.130813429
0.001283667
60S ribosomal protein L10A (RPL10aB)
fgenesh4_pm.C_LG_IX000091
AT5G22770
Q8LPL6
31.4
cell.vesicle transport
1.133478298
0.00270556
ALPHA-ADR (ALPHA-ADAPTIN); binding / structural molecule
eugene3.00280289
AT3G52990
A8MR07
4.1.14
glycolysis.cytosolic branch.pyruvate kinase (PK)
1.135433708
0.00101944
pyruvate kinase, putative
estExt_Genewise1_v1.C_1230260
AT3G02560
Q9M885
29.2.1.2.1.7
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7
1.135564344
0.000698042
40S ribosomal protein S7 (RPS7B)
estExt_fgenesh4_pg.C_LG_III0669
AT5G39850
Q9FLF0
29.2.1.2.1.9
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9
1.139115252
0.000506861
40S ribosomal protein S9 (RPS9C)
estExt_fgenesh4_pm.C_LG_XII0164
AT1G18080
O24456
33.99
development.unspecified
1.147952304
0.001517642
ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding
Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.
estExt_Genewise1_v1.C_LG_III0629
AT1G27350
35.2
not assigned.unknown
1.155042276
0.002015248
estExt_fgenesh4_pg.C_280257
AT3G10050
Q9ZSS6
13.1.4.5.1
amino acid metabolism.synthesis.branched chain group.isoleucine specific.threonine ammonia-lyase
1.155188808
0.001639034
OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase
first enzyme in the biosynthetic pathway of isoleucine
estExt_Genewise1_v1.C_LG_XI0817
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
1.15681301
0.00088319
60S ribosomal protein L9 (RPL90B)
estExt_Genewise1_v1.C_LG_VIII1205
AT1G07920
Q0WL56
29.2.4
protein.synthesis.elongation
1.157699144
0.000629897
elongation factor 1-alpha / EF-1-alpha
eugene3.00011799
AT1G74050
Q9C9C5
29.2.1.2.2.6
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6
1.161068323
0.000277339
60S ribosomal protein L6 (RPL6C)
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