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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00061661
AT5G18200
Q9FK51
2.1.2.60
major CHO metabolism.synthesis.starch.ADP Glucose Phosphorylase
1.107947766
0.001158218
UDP-glucose:hexose-1-phosphate uridylyltransferase
estExt_Genewise1_v1.C_LG_XVI2163
AT1G70600
P49637
29.2.1.2.2.527
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A
1.10976888
0.00111532
60S ribosomal protein L27A (RPL27aC)
eugene3.01330055
AT3G05590
P42791
29.2.1.2.2.18
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18
1.111001547
0.000243188
RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Encodes cytoplasmic ribosomal protein L18.
gw1.IV.2659.1
AT1G29280
Q9LP56
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.116560181
0.00212493
WRKY65 (WRKY DNA-binding protein 65); transcription factor
member of WRKY Transcription Factor; Group II-e
estExt_Genewise1_v1.C_LG_XVI1732
AT2G41840
P49688
29.2.1.2.1.2
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S2
1.116587977
0.001593485
40S ribosomal protein S2 (RPS2C)
eugene3.00180798
AT2G36460
Q9SJQ9
4.1.10
glycolysis.cytosolic branch.aldolase
1.116983785
0.00306676
fructose-bisphosphate aldolase, putative
gw1.X.5793.1
AT3G04840
Q9CAV0
29.2.1.2.1.53
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A
1.117617768
0.000286909
40S ribosomal protein S3A (RPS3aA)
grail3.0001009902
AT1G36240
Q9C8F7
29.2.1.2.2.30
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L30
1.118453358
0.000843765
60S ribosomal protein L30 (RPL30A)
eugene3.00051184
AT1G22780
29.2.1.2.1.18
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18
1.118762759
0.000986938
PFL (POINTED FIRST LEAVES); structural constituent of ribosome
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.
estExt_Genewise1_v1.C_LG_XVI2419
AT2G36170
B9DHA6
29.2.1.2.2.40
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40
1.120529961
0.001181997
ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)
estExt_fgenesh4_pg.C_LG_VIII0532
AT1G07070
Q9LMK0
29.2.1.2.2.535
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A
1.121594393
0.001298819
60S ribosomal protein L35a (RPL35aA)
eugene3.00140097
AT3G43980
Q680P8
29.2.1.2.1.29
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S29
1.125629671
0.001984081
40S ribosomal protein S29 (RPS29A)
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