Species & Dataset
Experiment
Foliar Ozone Injury
-
Populus trichocarpa
-
Common name: Poplar cottonwood
-
Family: Salicaceae
-
Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
-
Tissue: Shoot leaves
-
Ozone concentration: 16.7 nL L-1 (Control)
-
93.1 nL L-1 (Treatment)
-
Ozone exposure: Whole experimental period
-
Sampling time: End of exposure period
-
Platform: Microarray
-
Year of study: 2010
-
Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00061661 | AT5G18200 | Q9FK51 | 2.1.2.60 | major CHO metabolism.synthesis.starch.ADP Glucose Phosphorylase | 1.107947766 | 0.001158218 | UDP-glucose:hexose-1-phosphate uridylyltransferase | |
estExt_Genewise1_v1.C_LG_XVI2163 | AT1G70600 | P49637 | 29.2.1.2.2.527 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A | 1.10976888 | 0.00111532 | 60S ribosomal protein L27A (RPL27aC) | |
eugene3.01330055 | AT3G05590 | P42791 | 29.2.1.2.2.18 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18 | 1.111001547 | 0.000243188 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome | Encodes cytoplasmic ribosomal protein L18. |
gw1.IV.2659.1 | AT1G29280 | Q9LP56 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.116560181 | 0.00212493 | WRKY65 (WRKY DNA-binding protein 65); transcription factor | member of WRKY Transcription Factor; Group II-e |
estExt_Genewise1_v1.C_LG_XVI1732 | AT2G41840 | P49688 | 29.2.1.2.1.2 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S2 | 1.116587977 | 0.001593485 | 40S ribosomal protein S2 (RPS2C) | |
eugene3.00180798 | AT2G36460 | Q9SJQ9 | 4.1.10 | glycolysis.cytosolic branch.aldolase | 1.116983785 | 0.00306676 | fructose-bisphosphate aldolase, putative | |
gw1.X.5793.1 | AT3G04840 | Q9CAV0 | 29.2.1.2.1.53 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A | 1.117617768 | 0.000286909 | 40S ribosomal protein S3A (RPS3aA) | |
grail3.0001009902 | AT1G36240 | Q9C8F7 | 29.2.1.2.2.30 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L30 | 1.118453358 | 0.000843765 | 60S ribosomal protein L30 (RPL30A) | |
eugene3.00051184 | AT1G22780 | 29.2.1.2.1.18 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18 | 1.118762759 | 0.000986938 | PFL (POINTED FIRST LEAVES); structural constituent of ribosome | S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. | |
estExt_Genewise1_v1.C_LG_XVI2419 | AT2G36170 | B9DHA6 | 29.2.1.2.2.40 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40 | 1.120529961 | 0.001181997 | ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) | |
estExt_fgenesh4_pg.C_LG_VIII0532 | AT1G07070 | Q9LMK0 | 29.2.1.2.2.535 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A | 1.121594393 | 0.001298819 | 60S ribosomal protein L35a (RPL35aA) | |
eugene3.00140097 | AT3G43980 | Q680P8 | 29.2.1.2.1.29 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S29 | 1.125629671 | 0.001984081 | 40S ribosomal protein S29 (RPS29A) |