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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0003069401
AT1G21750
Q9XI01
21.1.1
redox.thioredoxin.PDIL
1.087926832
0.002214852
ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9
eugene3.00021246
AT5G26667
O04905
23.4.3
nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase
1.088078263
0.001551768
uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6)
estExt_fgenesh4_pm.C_LG_VIII0532
AT2G01140
Q9ZU52
1.3.6
PS.calvin cycle.aldolase
1.094925481
0.001742969
fructose-bisphosphate aldolase, putative
estExt_fgenesh4_pm.C_LG_V0048
AT4G31700
O48549
29.2.1.2.1.6
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6
1.097123556
0.002812057
RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome
Encodes a putative ribosomal protein S6 (rps6).
estExt_fgenesh4_pm.C_400015
AT4G16720
O23515
29.2.1.2.2.15
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L15
1.100769475
0.001462565
60S ribosomal protein L15 (RPL15A)
estExt_Genewise1_v1.C_LG_X4452
AT4G27090
Q9T043
29.2.1.2.2.14
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L14
1.101706502
0.002068203
60S ribosomal protein L14 (RPL14B)
gw1.V.3607.1
AT4G35630
Q96255
13.1.5.1.2
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase
1.102723209
0.000305522
PSAT (phosphoserine aminotransferase); phosphoserine transaminase
Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway.
estExt_fgenesh4_pm.C_1220043
AT2G17360
Q93VH9
29.2.1.2.1.4
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4
1.104204723
0.001680145
40S ribosomal protein S4 (RPS4A)
estExt_fgenesh4_pg.C_LG_IX0938
AT1G74050
Q9C9C5
29.2.1.2.2.6
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6
1.105458615
0.000958921
60S ribosomal protein L6 (RPL6C)
estExt_Genewise1_v1.C_LG_VI2460
AT1G15250
Q8LFH7
29.2.1.2.2.37
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37
1.106130331
0.000479361
60S ribosomal protein L37 (RPL37A)
grail3.0090013401
AT4G39200
Q9T029
29.2.1.2.1.25
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25
1.106603433
0.002167119
40S ribosomal protein S25 (RPS25E)
estExt_fgenesh4_pg.C_LG_X0832
AT2G09990
Q9SK22
29.2.1.2.1.16
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16
1.106654344
0.001084941
40S ribosomal protein S16 (RPS16A)
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