Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
grail3.0003069401 | AT1G21750 | Q9XI01 | 21.1.1 | redox.thioredoxin.PDIL | 1.087926832 | 0.002214852 | ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 |
eugene3.00021246 | AT5G26667 | O04905 | 23.4.3 | nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase | 1.088078263 | 0.001551768 | uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6) | |
estExt_fgenesh4_pm.C_LG_VIII0532 | AT2G01140 | Q9ZU52 | 1.3.6 | PS.calvin cycle.aldolase | 1.094925481 | 0.001742969 | fructose-bisphosphate aldolase, putative | |
estExt_fgenesh4_pm.C_LG_V0048 | AT4G31700 | O48549 | 29.2.1.2.1.6 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6 | 1.097123556 | 0.002812057 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome | Encodes a putative ribosomal protein S6 (rps6). |
estExt_fgenesh4_pm.C_400015 | AT4G16720 | O23515 | 29.2.1.2.2.15 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L15 | 1.100769475 | 0.001462565 | 60S ribosomal protein L15 (RPL15A) | |
estExt_Genewise1_v1.C_LG_X4452 | AT4G27090 | Q9T043 | 29.2.1.2.2.14 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L14 | 1.101706502 | 0.002068203 | 60S ribosomal protein L14 (RPL14B) | |
gw1.V.3607.1 | AT4G35630 | Q96255 | 13.1.5.1.2 | amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase | 1.102723209 | 0.000305522 | PSAT (phosphoserine aminotransferase); phosphoserine transaminase | Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway. |
estExt_fgenesh4_pm.C_1220043 | AT2G17360 | Q93VH9 | 29.2.1.2.1.4 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4 | 1.104204723 | 0.001680145 | 40S ribosomal protein S4 (RPS4A) | |
estExt_fgenesh4_pg.C_LG_IX0938 | AT1G74050 | Q9C9C5 | 29.2.1.2.2.6 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6 | 1.105458615 | 0.000958921 | 60S ribosomal protein L6 (RPL6C) | |
estExt_Genewise1_v1.C_LG_VI2460 | AT1G15250 | Q8LFH7 | 29.2.1.2.2.37 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37 | 1.106130331 | 0.000479361 | 60S ribosomal protein L37 (RPL37A) | |
grail3.0090013401 | AT4G39200 | Q9T029 | 29.2.1.2.1.25 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25 | 1.106603433 | 0.002167119 | 40S ribosomal protein S25 (RPS25E) | |
estExt_fgenesh4_pg.C_LG_X0832 | AT2G09990 | Q9SK22 | 29.2.1.2.1.16 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16 | 1.106654344 | 0.001084941 | 40S ribosomal protein S16 (RPS16A) |