top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_V0078
AT5G10170
Q9LX12
3.4.3
minor CHO metabolism.myo-inositol.InsP Synthases
1.298593345
0.001331293
inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative
estExt_fgenesh4_pg.C_LG_I1883
AT4G05320
Q8H159
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
1.30217614
0.003162497
UBQ10 (POLYUBIQUITIN 10); protein binding
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
gw1.IV.2431.1
AT5G08350
Q9FTA0
17.1.3
hormone metabolism.abscisic acid.induced-regulated-responsive-activated
1.30243094
0.002680963
GRAM domain-containing protein / ABA-responsive protein-related
estExt_Genewise1_v1.C_LG_IX3421
AT5G20290
Q93VG5
29.2.1.2.1.8
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8
1.30483181
0.000488674
40S ribosomal protein S8 (RPS8A)
grail3.0047006401
AT5G13420
Q9LYR4
7.2.2
OPP.non-reductive PP.transaldolase
1.305794429
0.001516294
transaldolase, putative
estExt_fgenesh4_pm.C_LG_II0304
AT1G43170
P17094
29.2.1.2.2.3
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L3
1.307400878
0.000315075
ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome
Encodes a cytoplasmic ribosomal protein.
estExt_fgenesh4_pm.C_LG_I1230
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
1.31051577
0.000260531
60S ribosomal protein L9 (RPL90B)
estExt_fgenesh4_pg.C_LG_XV1007
AT3G45030
29.2.1.2.1.20
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20
1.076352452
0.001252855
40S ribosomal protein S20 (RPS20A)
estExt_Genewise1_v1.C_LG_XI1809
AT4G05320
Q8H159
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
1.08196861
0.004135403
UBQ10 (POLYUBIQUITIN 10); protein binding
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
grail3.1094000101
AT3G21760
Q9LSY8
26.2
misc.UDP glucosyl and glucoronyl transferases
1.084123182
0.000461778
UDP-glucoronosyl/UDP-glucosyl transferase family protein
grail3.0022037901
AT1G07920
Q0WL56
29.2.4
protein.synthesis.elongation
1.085783402
0.002433175
elongation factor 1-alpha / EF-1-alpha
estExt_fgenesh4_pg.C_LG_I2387
AT5G14040
Q9FMU6
34.9
transport.metabolite transporters at the mitochondrial membrane
1.086953362
0.002015778
mitochondrial phosphate transporter
bottom of page