Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pg.C_LG_V1341 | AT1G04270 | Q08112 | 29.2.1.2.1.15 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15 | 1.255888609 | 0.000703504 | RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome | Encodes cytosolic ribosomal protein S15. |
estExt_fgenesh4_pm.C_LG_III0647 | AT3G08580 | P31167 | 34.8 | transport.metabolite transporters at the envelope membrane | 1.257306315 | 0.000467565 | AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding | mitochondrial ADP/ATP carrier |
gw1.VIII.1137.1 | AT3G25780 | Q9LS01 | 17.7.1.4 | hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase | 1.259840439 | 0.000855091 | AOC3 (ALLENE OXIDE CYCLASE 3) | Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. |
grail3.0200000501 | AT1G72370 | Q08682 | 29.2.1.2.1.31 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA | 1.262162975 | 0.000358184 | P40 (40S ribosomal protein SA); structural constituent of ribosome | acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. |
estExt_fgenesh4_pg.C_LG_II2507 | AT3G23990 | P29197 | 29.6 | protein.folding | 1.26579387 | 0.000118343 | HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding | mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria. |
estExt_fgenesh4_pg.C_280124 | AT5G02960 | P49201 | 29.2.1.2.1.23 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23 | 1.267054811 | 0.001377934 | 40S ribosomal protein S23 (RPS23B) | |
grail3.3538000101 | AT2G04540 | Q8L3X9 | 11.1.3 | lipid metabolism.FA synthesis and FA elongation.ketoacyl ACP synthase | 1.270181287 | 0.000697045 | 3-oxoacyl-(acyl-carrier-protein) synthase II, putative | |
eugene3.00012291 | AT5G64260 | Q9FE06 | 30.1 | signalling.in sugar and nutrient physiology | 1.272126751 | 0.002951559 | phosphate-responsive protein, putative | |
estExt_fgenesh4_pm.C_1480010 | AT2G44350 | P20115 | 8.1.2 | TCA / org transformation.TCA.CS | 1.27234974 | 0.001226017 | ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase | encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. |
eugene3.00002480 | AT4G13170 | Q9SVR0 | 29.2.1.2.2.513 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A | 1.277336782 | 0.001162577 | 60S ribosomal protein L13A (RPL13aC) | |
grail3.0007017402 | AT1G15250 | Q8LFH7 | 29.2.1.2.2.37 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37 | 1.28488338 | 0.000891505 | 60S ribosomal protein L37 (RPL37A) | |
grail3.0009040502 | AT1G59900 | P52901 | 8.1.1.1 | TCA / org transformation.TCA.pyruvate DH.E1 | 1.285300805 | 0.001292369 | AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit); pyruvate dehydrogenase (acetyl-transferring) | encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC) |