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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pg.C_LG_V1341
AT1G04270
Q08112
29.2.1.2.1.15
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15
1.255888609
0.000703504
RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome
Encodes cytosolic ribosomal protein S15.
estExt_fgenesh4_pm.C_LG_III0647
AT3G08580
P31167
34.8
transport.metabolite transporters at the envelope membrane
1.257306315
0.000467565
AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding
mitochondrial ADP/ATP carrier
gw1.VIII.1137.1
AT3G25780
Q9LS01
17.7.1.4
hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase
1.259840439
0.000855091
AOC3 (ALLENE OXIDE CYCLASE 3)
Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.
grail3.0200000501
AT1G72370
Q08682
29.2.1.2.1.31
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA
1.262162975
0.000358184
P40 (40S ribosomal protein SA); structural constituent of ribosome
acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
estExt_fgenesh4_pg.C_LG_II2507
AT3G23990
P29197
29.6
protein.folding
1.26579387
0.000118343
HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding
mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
estExt_fgenesh4_pg.C_280124
AT5G02960
P49201
29.2.1.2.1.23
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23
1.267054811
0.001377934
40S ribosomal protein S23 (RPS23B)
grail3.3538000101
AT2G04540
Q8L3X9
11.1.3
lipid metabolism.FA synthesis and FA elongation.ketoacyl ACP synthase
1.270181287
0.000697045
3-oxoacyl-(acyl-carrier-protein) synthase II, putative
eugene3.00012291
AT5G64260
Q9FE06
30.1
signalling.in sugar and nutrient physiology
1.272126751
0.002951559
phosphate-responsive protein, putative
estExt_fgenesh4_pm.C_1480010
AT2G44350
P20115
8.1.2
TCA / org transformation.TCA.CS
1.27234974
0.001226017
ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase
encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.
eugene3.00002480
AT4G13170
Q9SVR0
29.2.1.2.2.513
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A
1.277336782
0.001162577
60S ribosomal protein L13A (RPL13aC)
grail3.0007017402
AT1G15250
Q8LFH7
29.2.1.2.2.37
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37
1.28488338
0.000891505
60S ribosomal protein L37 (RPL37A)
grail3.0009040502
AT1G59900
P52901
8.1.1.1
TCA / org transformation.TCA.pyruvate DH.E1
1.285300805
0.001292369
AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit); pyruvate dehydrogenase (acetyl-transferring)
encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)
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