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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00071182
AT4G36220
Q42600
16.2.1.8
secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H
1.222413821
0.000572301
FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase
encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.
gw1.III.1304.1
AT1G72330
Q9LDV4
13.1.1.3.1
amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase
1.223418478
0.001692489
ALAAT2 (ALANINE AMINOTRANSFERASE 2); alanine transaminase
Encodes for alanine aminotransferase ALAAT2.
estExt_fgenesh4_pg.C_6280001
AT4G38830
Q9T0J1
30.2.17
signalling.receptor kinases.DUF 26
1.224491407
0.00155504
protein kinase family protein
estExt_fgenesh4_pm.C_LG_X0137
AT1G04480
Q593H7
29.2.1.2.2.23
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23
1.230239513
0.000267589
60S ribosomal protein L23 (RPL23A)
gw1.XVI.3868.1
AT5G58420
Q8VYK6
29.2.1.2.1.4
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4
1.239154184
0.000137712
40S ribosomal protein S4 (RPS4D)
estExt_fgenesh4_pm.C_LG_XII0488
AT3G45030
29.2.1.2.1.20
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20
1.241436739
0.000553874
40S ribosomal protein S20 (RPS20A)
gw1.II.1879.1
AT1G19600
Q9LN35
3.5
minor CHO metabolism.others
1.242419194
0.001624757
pfkB-type carbohydrate kinase family protein
grail3.0040004901
AT4G30800
O65569
29.2.1.2.1.11
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11
1.243209597
0.000767269
40S ribosomal protein S11 (RPS11B)
eugene3.00060040
AT5G47770
Q09152
16.1.2.9
secondary metabolism.isoprenoids.mevalonate pathway.farnesyl pyrophosphate synthetase
1.247988113
0.00346525
FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase
Encodes a protein with farnesyl diphosphate synthase activity.
estExt_fgenesh4_pg.C_LG_X1328
AT5G49520
Q9FGZ4
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.251422856
0.001791102
WRKY48 (WRKY DNA-binding protein 48); transcription factor
member of WRKY Transcription Factor; Group II-c
eugene3.00021666
AT1G01100
Q8LCW9
29.2.1.2.2.81
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P1
1.251587595
0.000938794
60S acidic ribosomal protein P1 (RPP1A)
estExt_Genewise1_v1.C_LG_X2396
AT3G55120
P41088
16.8.2.2
secondary metabolism.flavonoids.chalcones.chalcone isomerase
1.254897883
0.000722716
TT5 (TRANSPARENT TESTA 5); chalcone isomerase
Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.
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