Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00071182 | AT4G36220 | Q42600 | 16.2.1.8 | secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H | 1.222413821 | 0.000572301 | FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase | encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. |
gw1.III.1304.1 | AT1G72330 | Q9LDV4 | 13.1.1.3.1 | amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase | 1.223418478 | 0.001692489 | ALAAT2 (ALANINE AMINOTRANSFERASE 2); alanine transaminase | Encodes for alanine aminotransferase ALAAT2. |
estExt_fgenesh4_pg.C_6280001 | AT4G38830 | Q9T0J1 | 30.2.17 | signalling.receptor kinases.DUF 26 | 1.224491407 | 0.00155504 | protein kinase family protein | |
estExt_fgenesh4_pm.C_LG_X0137 | AT1G04480 | Q593H7 | 29.2.1.2.2.23 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23 | 1.230239513 | 0.000267589 | 60S ribosomal protein L23 (RPL23A) | |
gw1.XVI.3868.1 | AT5G58420 | Q8VYK6 | 29.2.1.2.1.4 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4 | 1.239154184 | 0.000137712 | 40S ribosomal protein S4 (RPS4D) | |
estExt_fgenesh4_pm.C_LG_XII0488 | AT3G45030 | 29.2.1.2.1.20 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20 | 1.241436739 | 0.000553874 | 40S ribosomal protein S20 (RPS20A) | ||
gw1.II.1879.1 | AT1G19600 | Q9LN35 | 3.5 | minor CHO metabolism.others | 1.242419194 | 0.001624757 | pfkB-type carbohydrate kinase family protein | |
grail3.0040004901 | AT4G30800 | O65569 | 29.2.1.2.1.11 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11 | 1.243209597 | 0.000767269 | 40S ribosomal protein S11 (RPS11B) | |
eugene3.00060040 | AT5G47770 | Q09152 | 16.1.2.9 | secondary metabolism.isoprenoids.mevalonate pathway.farnesyl pyrophosphate synthetase | 1.247988113 | 0.00346525 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase | Encodes a protein with farnesyl diphosphate synthase activity. |
estExt_fgenesh4_pg.C_LG_X1328 | AT5G49520 | Q9FGZ4 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.251422856 | 0.001791102 | WRKY48 (WRKY DNA-binding protein 48); transcription factor | member of WRKY Transcription Factor; Group II-c |
eugene3.00021666 | AT1G01100 | Q8LCW9 | 29.2.1.2.2.81 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P1 | 1.251587595 | 0.000938794 | 60S acidic ribosomal protein P1 (RPP1A) | |
estExt_Genewise1_v1.C_LG_X2396 | AT3G55120 | P41088 | 16.8.2.2 | secondary metabolism.flavonoids.chalcones.chalcone isomerase | 1.254897883 | 0.000722716 | TT5 (TRANSPARENT TESTA 5); chalcone isomerase | Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. |