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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
fgenesh4_kg.C_LG_VI000029
AT3G02560
Q9M885
29.2.1.2.1.7
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7
1.189608696
0.000856366
40S ribosomal protein S7 (RPS7B)
estExt_Genewise1_v1.C_LG_XVIII1780
AT4G31985
29.2.1.2.2.39
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39
1.190881615
0.000522276
60S ribosomal protein L39 (RPL39C)
estExt_fgenesh4_pg.C_LG_VIII1772
AT4G15520
Q9SUL3
35.1
not assigned.no ontology
1.194584675
0.001031113
tRNA/rRNA methyltransferase (SpoU) family protein
estExt_Genewise1_v1.C_LG_XII0050
AT1G59722
F4ID24
35.2
not assigned.unknown
1.195307811
0.000637625
unknown protein
fgenesh4_pg.C_LG_XVI000455
AT5G06720
Q42578
26.12
misc.peroxidases
1.198566892
0.001248503
peroxidase, putative
estExt_Genewise1_v1.C_LG_VII3915
AT2G18020
P46286
29.2.1.2.2.8
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L8
1.209119234
0.000891673
EMB2296 (EMBRYO DEFECTIVE 2296); structural constituent of ribosome
estExt_fgenesh4_pm.C_LG_X0765
AT1G07070
Q9LMK0
29.2.1.2.2.535
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A
1.211266252
0.000245999
60S ribosomal protein L35a (RPL35aA)
estExt_fgenesh4_pm.C_LG_XVI0194
AT1G09590
Q43291
29.2.1.2.2.21
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21
1.21234231
0.00093525
60S ribosomal protein L21 (RPL21A)
grail3.0053004502
AT5G20290
Q93VG5
29.2.1.2.1.8
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8
1.216554567
0.000600854
40S ribosomal protein S8 (RPS8A)
eugene3.00880022
AT4G13940
O23255
13.2.3.4
amino acid metabolism.degradation.aspartate family.methionine
1.216650771
0.002558397
HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase
Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.
grail3.0039014201
AT2G46370
Q9SKE2
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
1.221119925
0.004137066
JAR1 (JASMONATE RESISTANT 1)
An auxin-induced gene encoding a cytoplasmic localized phytochrome A signaling component protein similar to the GH3 family of proteins Loss of function mutants are defective in a variety of responses to jasmonic acid.
fgenesh4_pg.C_LG_VII001101
AT3G53620
Q9LFF9
23.4.99
nucleotide metabolism.phosphotransfer and pyrophosphatases.misc
1.221186393
0.002631527
inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative
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