Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
fgenesh4_kg.C_LG_VI000029 | AT3G02560 | Q9M885 | 29.2.1.2.1.7 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7 | 1.189608696 | 0.000856366 | 40S ribosomal protein S7 (RPS7B) | |
estExt_Genewise1_v1.C_LG_XVIII1780 | AT4G31985 | 29.2.1.2.2.39 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39 | 1.190881615 | 0.000522276 | 60S ribosomal protein L39 (RPL39C) | ||
estExt_fgenesh4_pg.C_LG_VIII1772 | AT4G15520 | Q9SUL3 | 35.1 | not assigned.no ontology | 1.194584675 | 0.001031113 | tRNA/rRNA methyltransferase (SpoU) family protein | |
estExt_Genewise1_v1.C_LG_XII0050 | AT1G59722 | F4ID24 | 35.2 | not assigned.unknown | 1.195307811 | 0.000637625 | unknown protein | |
fgenesh4_pg.C_LG_XVI000455 | AT5G06720 | Q42578 | 26.12 | misc.peroxidases | 1.198566892 | 0.001248503 | peroxidase, putative | |
estExt_Genewise1_v1.C_LG_VII3915 | AT2G18020 | P46286 | 29.2.1.2.2.8 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L8 | 1.209119234 | 0.000891673 | EMB2296 (EMBRYO DEFECTIVE 2296); structural constituent of ribosome | |
estExt_fgenesh4_pm.C_LG_X0765 | AT1G07070 | Q9LMK0 | 29.2.1.2.2.535 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A | 1.211266252 | 0.000245999 | 60S ribosomal protein L35a (RPL35aA) | |
estExt_fgenesh4_pm.C_LG_XVI0194 | AT1G09590 | Q43291 | 29.2.1.2.2.21 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21 | 1.21234231 | 0.00093525 | 60S ribosomal protein L21 (RPL21A) | |
grail3.0053004502 | AT5G20290 | Q93VG5 | 29.2.1.2.1.8 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8 | 1.216554567 | 0.000600854 | 40S ribosomal protein S8 (RPS8A) | |
eugene3.00880022 | AT4G13940 | O23255 | 13.2.3.4 | amino acid metabolism.degradation.aspartate family.methionine | 1.216650771 | 0.002558397 | HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase | Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. |
grail3.0039014201 | AT2G46370 | Q9SKE2 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 1.221119925 | 0.004137066 | JAR1 (JASMONATE RESISTANT 1) | An auxin-induced gene encoding a cytoplasmic localized phytochrome A signaling component protein similar to the GH3 family of proteins Loss of function mutants are defective in a variety of responses to jasmonic acid. |
fgenesh4_pg.C_LG_VII001101 | AT3G53620 | Q9LFF9 | 23.4.99 | nucleotide metabolism.phosphotransfer and pyrophosphatases.misc | 1.221186393 | 0.002631527 | inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative |