Species & Dataset
Experiment
Foliar Ozone Injury
-
Populus trichocarpa
-
Common name: Poplar cottonwood
-
Family: Salicaceae
-
Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
-
Tissue: Shoot leaves
-
Ozone concentration: 16.7 nL L-1 (Control)
-
93.1 nL L-1 (Treatment)
-
Ozone exposure: Whole experimental period
-
Sampling time: End of exposure period
-
Platform: Microarray
-
Year of study: 2010
-
Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00400106 | AT4G09320 | P39207 | 23.4.10 | nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase | 1.565595852 | 0.000252526 | NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase | nucleoside diphosphate kinase type 1 (NDPK1) gene, complete |
gw1.XII.485.1 | AT3G22370 | Q39219 | 9.4 | mitochondrial electron transport / ATP synthesis.alternative oxidase | 1.626837351 | 0.000292158 | AOX1A (alternative oxidase 1A); alternative oxidase | Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. |
gw1.I.4215.1 | AT2G14610 | P33154 | 20.1 | stress.biotic | 1.635499408 | 0.002609035 | PR1 (PATHOGENESIS-RELATED GENE 1) | PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. |
estExt_fgenesh4_pg.C_LG_XIX0984 | AT1G73325 | Q9FX28 | 20.1.7.6.1 | stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor | 1.659406821 | 0.003099456 | trypsin and protease inhibitor family protein / Kunitz family protein | |
eugene3.00140920 | AT5G13930 | P13114 | 16.8.2.1 | secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase | 1.661108372 | 0.002142473 | CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase | Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. |
gw1.29.38.1 | AT3G49010 | P41127 | 29.2.1.2.2.13 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13 | 1.182359312 | 0.000973392 | ATBBC1 (breast basic conserved 1); structural constituent of ribosome | Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). |
estExt_fgenesh4_pg.C_LG_VI1104 | AT1G09590 | Q43291 | 29.2.1.2.2.21 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21 | 1.183785676 | 0.000716923 | 60S ribosomal protein L21 (RPL21A) | |
estExt_Genewise1_v1.C_281127 | AT3G08590 | Q9M9K1 | 4.1.12 | glycolysis.cytosolic branch.phosphoglycerate mutase | 1.183946791 | 0.000488195 | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative | |
eugene3.00061162 | AT3G11940 | P51427 | 29.2.1.2.1.5 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5 | 1.184185246 | 0.000918226 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant. |
estExt_Genewise1_v1.C_LG_XVI1631 | AT2G42310 | Q9SLC8 | 35.2 | not assigned.unknown | 1.184316432 | 0.000941532 | ||
estExt_fgenesh4_pg.C_LG_VIII1330 | AT2G09990 | Q9SK22 | 29.2.1.2.1.16 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16 | 1.185098266 | 0.000390975 | 40S ribosomal protein S16 (RPS16A) | |
estExt_Genewise1_v1.C_LG_XIII0228 | AT5G05340 | Q9FLC0 | 26.12 | misc.peroxidases | 1.18572577 | 0.001289266 | peroxidase, putative |