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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00400106
AT4G09320
P39207
23.4.10
nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase
1.565595852
0.000252526
NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase
nucleoside diphosphate kinase type 1 (NDPK1) gene, complete
gw1.XII.485.1
AT3G22370
Q39219
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
1.626837351
0.000292158
AOX1A (alternative oxidase 1A); alternative oxidase
Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.
gw1.I.4215.1
AT2G14610
P33154
20.1
stress.biotic
1.635499408
0.002609035
PR1 (PATHOGENESIS-RELATED GENE 1)
PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.
estExt_fgenesh4_pg.C_LG_XIX0984
AT1G73325
Q9FX28
20.1.7.6.1
stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor
1.659406821
0.003099456
trypsin and protease inhibitor family protein / Kunitz family protein
eugene3.00140920
AT5G13930
P13114
16.8.2.1
secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase
1.661108372
0.002142473
CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
gw1.29.38.1
AT3G49010
P41127
29.2.1.2.2.13
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13
1.182359312
0.000973392
ATBBC1 (breast basic conserved 1); structural constituent of ribosome
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
estExt_fgenesh4_pg.C_LG_VI1104
AT1G09590
Q43291
29.2.1.2.2.21
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21
1.183785676
0.000716923
60S ribosomal protein L21 (RPL21A)
estExt_Genewise1_v1.C_281127
AT3G08590
Q9M9K1
4.1.12
glycolysis.cytosolic branch.phosphoglycerate mutase
1.183946791
0.000488195
2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative
eugene3.00061162
AT3G11940
P51427
29.2.1.2.1.5
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5
1.184185246
0.000918226
ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome
One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.
estExt_Genewise1_v1.C_LG_XVI1631
AT2G42310
Q9SLC8
35.2
not assigned.unknown
1.184316432
0.000941532
estExt_fgenesh4_pg.C_LG_VIII1330
AT2G09990
Q9SK22
29.2.1.2.1.16
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16
1.185098266
0.000390975
40S ribosomal protein S16 (RPS16A)
estExt_Genewise1_v1.C_LG_XIII0228
AT5G05340
Q9FLC0
26.12
misc.peroxidases
1.18572577
0.001289266
peroxidase, putative
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