Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0011005701
AT3G62710
10.6.1
cell wall.degradation.cellulases and beta -1,4-glucanases
2.706956745
0.000997186
glycosyl hydrolase family 3 protein
estExt_fgenesh4_pg.C_LG_VIII1530
AT2G29420
Q9ZW24
26.9
misc.glutathione S transferases
2.73432302
0.000370051
ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.
gw1.XII.1434.1
AT3G47780
Q9STT5
34.16
transport.ABC transporters and multidrug resistance systems
2.769225981
0.000116754
ATATH6 (ABC2 homolog 6); ATPase, coupled to transmembrane movement of substances
member of ATH subfamily
eugene3.52220001
AT3G25170
Q0V822
30.8
signalling.misc
2.7727314
0.0000406
RALFL26 (RALF-LIKE 26)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
estExt_fgenesh4_pg.C_LG_XIV1000
AT5G14780
Q9S7E4
25.10
C1-metabolism.formate dehydrogenase
2.785606417
0.00078974
FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor
Encodes a NAD-dependent formate dehydrogenase.
grail3.11299000101
AT1G17170
Q9SHH6
26.9
misc.glutathione S transferases
2.817700193
0.000286147
ATGSTU24 (Arabidopsis thaliana Glutathione S-transferase (class tau) 24); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
fgenesh4_pg.C_LG_X001297
AT3G57270
Q9M2M0
26.4.1
misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase
2.819907996
0.00336622
BG1 (BETA-1,3-GLUCANASE 1); hydrolase, hydrolyzing O-glycosyl compounds
encodes a member of glycosyl hydrolase family 17
eugene3.00070973
AT2G23620
Q8S8S9
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
2.836263836
0.003333474
esterase, putative
grail3.0004034803
AT4G37970
O65621
16.2.1.10
secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD
3.065250995
0.000432311
mannitol dehydrogenase, putative
estExt_Genewise1_v1.C_LG_III0308
AT1G64160
Q9SH66
20.1.7
stress.biotic.PR-proteins
3.165020824
0.000353718
disease resistance-responsive family protein / dirigent family protein
estExt_fgenesh4_pg.C_770059
AT1G24020
Q93VR4
20.2.99
stress.abiotic.unspecified
3.46508963
0.0000178
Bet v I allergen family protein
estExt_fgenesh4_pm.C_LG_IV0566
AT3G12500
P19171
20.1
stress.biotic
3.778836487
0.000422085
ATHCHIB (BASIC CHITINASE); chitinase
encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
eugene3.00070346
AT1G73260
Q8RXD5
20.1.7.6.1
stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor
4.372610679
0.000549868
trypsin and protease inhibitor family protein / Kunitz family protein
estExt_Genewise1_v1.C_LG_XVI3242
AT2G37770
Q0PGJ6
3.5
minor CHO metabolism.others
1.664496372
0.001768656
oxidoreductase
estExt_Genewise1_v1.C_LG_XIV2782
AT3G63010
Q9LYC1
17.6.2
hormone metabolism.gibberelin.signal transduction
1.675410238
0.003971384
ATGID1B/GID1B (GA INSENSITIVE DWARF1B)
Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.
fgenesh4_pm.C_LG_XV000479
AT5G52470
Q9FEF8
27.1
RNA.processing
1.696377524
0.000299527
FIB1 (FIBRILLARIN 1)
encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.
estExt_Genewise1_v1.C_LG_IX3674
AT3G07600
Q9SSF0
15
metal handling
1.697540864
0.001132159
heavy-metal-associated domain-containing protein
eugene3.00100655
AT2G27380
Q9ZQI0
35.1.42
not assigned.no ontology.proline rich family
1.706860996
0.000443601
ATEPR1 (Arabidopsis thaliana extensin proline-rich 1)
Encodes an extensin like gene involved in seed germination.
grail3.19938000101
AT3G51240
Q9S818
16.8.3.2
secondary metabolism.flavonoids.dihydroflavonols.flavanone 3-hydroxylase
1.723826327
0.000985708
F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase
Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.
grail3.0036009801
AT2G29420
Q9ZW24
26.9
misc.glutathione S transferases
1.724551335
0.002865151
ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.
estExt_Genewise1_v1.C_LG_XIV0250
AT1G02930
P42760
26.9
misc.glutathione S transferases
1.750390524
0.002383737
ATGSTF6 (EARLY RESPONSIVE TO DEHYDRATION 11); glutathione transferase
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
estExt_fgenesh4_pm.C_LG_XIX0276
AT1G26910
Q08770
29.2.1.2.2.10
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10
1.761304196
0.000629799
60S ribosomal protein L10 (RPL10B)
grail3.5873000103
AT5G61030
Q9FNR1
27.4
RNA.RNA binding
1.768032569
0.000230029
GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
grail3.0024029101
AT2G26190
O64851
30.3
signalling.calcium
1.776028609
0.000867401
calmodulin-binding family protein
grail3.0018023901
AT4G11820
P54873
16.1.2.2
secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase
1.782933384
0.001039251
BAP1 (hydroxymethylglutaryl-CoA synthase)
Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.
grail3.0055008002
AT4G27270
Q6NQE2
11.8
lipid metabolism.'exotics'(steroids, squalene etc)
1.786026576
0.00035952
quinone reductase family protein
estExt_fgenesh4_pm.C_1230010
AT3G02360
Q9FWA3
7.1.3
OPP.oxidative PP.6-phosphogluconate dehydrogenase
1.797127843
0.000702691
6-phosphogluconate dehydrogenase family protein
estExt_Genewise1_v1.C_LG_II0799
AT5G42800
P51102
16.8.3.1
secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase
1.818976687
0.001211493
DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase
dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.
gw1.131.45.1
AT3G62020
Q9M263
20.2.99
stress.abiotic.unspecified
1.82091624
0.0000954
GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir
germin-like protein (GLP10)
estExt_Genewise1_v1.C_280658
AT2G37040
P35510
16.2.1.1
secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL
1.830293095
0.000879196
PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase
encodes a protein similar to phenylalanine ammonia-lyase
estExt_fgenesh4_pm.C_LG_I1023
AT4G34050
O49499
16.2.1.6
secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT
1.832029745
0.00354435
caffeoyl-CoA 3-O-methyltransferase, putative
estExt_Genewise1_v1.C_LG_IV3894
AT3G02720
Q9M8R4
35.1
not assigned.no ontology
1.835552622
0.002029597
DJ-1 family protein / protease-related
eugene3.00180672
AT5G24105
Q8L9T8
35.2
not assigned.unknown
1.855190001
0.003317554
AGP41
Encodes a putative arabinogalactan-protein (AGP41).
grail3.0092008201
AT2G38470
Q8S8P5
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.869543236
0.000524977
WRKY33 (WRKY DNA-binding protein 33); transcription factor
Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens.
gw1.II.2573.1
AT3G19580
Q9SSW2
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
1.873219437
0.001638316
AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding
Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.
eugene3.00150904
AT5G07440
Q38946
12.3.1
N-metabolism.N-degradation.glutamate dehydrogenase
1.903723715
0.00015378
GDH2 (GLUTAMATE DEHYDROGENASE 2); oxidoreductase
Encodes the alpha-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.
eugene3.00121130
AT5G52390
Q9FHC1
30.1
signalling.in sugar and nutrient physiology
1.903790278
0.000716713
photoassimilate-responsive protein, putative
estExt_fgenesh4_pg.C_LG_X0484
AT3G04120
P25858
4.1.8
glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)
1.915430248
0.000471439
GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase
encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
grail3.0009044702
AT1G17710
Q9FZ62
26.13
misc.acid and other phosphatases
1.949624384
0.000035
phosphoric monoester hydrolase
eugene3.00160180
AT3G09270
Q9SR36
26.9
misc.glutathione S transferases
1.970440475
0.000108888
ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
fgenesh4_pg.C_scaffold_29000012
AT1G72310
Q9XF63
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
1.97132437
0.000165563
ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding
Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).
grail3.0023033201
AT5G01600
Q39101
15.2
metal handling.binding, chelation and storage
1.979132378
0.000257495
ATFER1 (ferretin 1); ferric iron binding
Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide.
estExt_fgenesh4_pg.C_280066
AT3G43190
Q9LXL5
2.2.1.5
major CHO metabolism.degradation.sucrose.Susy
2.024956669
0.0000318
SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups
Encodes a protein with sucrose synthase activity (SUS4).
estExt_Genewise1_v1.C_LG_XI1801
AT1G24020
Q93VR4
20.2.99
stress.abiotic.unspecified
2.031395596
0.000833617
Bet v I allergen family protein
estExt_Genewise1_v1.C_LG_I1127
AT1G07440
P0DKI3
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
2.057299581
0.000364068
tropinone reductase, putative / tropine dehydrogenase, putative
gw1.XIV.108.1
AT5G43940
Q96533
26.11
misc.alcohol dehydrogenases
2.10395321
0.002171075
ADH2 (ALCOHOL DEHYDROGENASE 2); formaldehyde dehydrogenase (glutathione)
Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid.
estExt_Genewise1_v1.C_LG_II4045
AT3G07220
Q9SFV2
27.3.48
RNA.regulation of transcription.FHA transcription factor
2.118279366
0.004011266
transcriptional activator, putative
gw1.IX.2492.1
AT3G43740
Q6NQP4
35.1
not assigned.no ontology
2.15277752
0.0000309
leucine-rich repeat family protein
eugene3.00050086
AT1G01720
Q39013
33.99
development.unspecified
2.186336029
0.002696686
ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor
belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding.
gw1.I.9073.1
AT4G11650
P50700
20.2
stress.abiotic
2.219216184
0.003573415
ATOSM34 (OSMOTIN 34)
osmotin-like protein
fgenesh4_pg.C_scaffold_481000004
AT5G45540
Q9FHI2
35.2
not assigned.unknown
2.220102477
0.002360497
estExt_Genewise1_v1.C_62380001
AT2G14610
P33154
20.1
stress.biotic
2.257416871
0.001274801
PR1 (PATHOGENESIS-RELATED GENE 1)
PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.
estExt_Genewise1_v1.C_14600006
AT1G24020
Q93VR4
20.2.99
stress.abiotic.unspecified
2.26430473
0.000344671
Bet v I allergen family protein
estExt_Genewise1_v1.C_13540001
AT5G01600
Q39101
15.2
metal handling.binding, chelation and storage
2.28131629
0.0000146
ATFER1 (ferretin 1); ferric iron binding
Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide.
estExt_fgenesh4_pg.C_LG_XIII0199
AT3G04720
P43082
20.1
stress.biotic
2.293176327
0.001332712
PR4 (PATHOGENESIS-RELATED 4)
Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.
estExt_fgenesh4_pg.C_LG_I0450
AT5G13930
P13114
16.8.2.1
secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase
2.322072461
0.000677159
CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
estExt_Genewise1_v1.C_LG_IV0305
AT3G02230
Q9SRT9
10.5.5
cell wall.cell wall proteins.RGP
2.363529254
0.001793986
RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)
reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis
estExt_Genewise1_v1.C_LG_V0127
AT4G19950
Q6DBH7
35.2
not assigned.unknown
2.402587833
0.000559228
gw1.5658.2.1
AT5G42510
Q9FIG6
20.1.7
stress.biotic.PR-proteins
2.431470159
0.000812747
disease resistance-responsive family protein
gw1.I.8918.1
AT4G11650
P50700
20.2
stress.abiotic
2.470862344
0.003022215
ATOSM34 (OSMOTIN 34)
osmotin-like protein
gw1.182.27.1
AT1G08170
Q9SGE3
28.1.3.2.2
DNA.synthesis/chromatin structure.histone.core.H2B
2.532096813
0.000275032
histone H2B family protein
estExt_Genewise1_v1.C_LG_XI0270
AT4G27270
Q6NQE2
11.8
lipid metabolism.'exotics'(steroids, squalene etc)
2.591935893
0.000274645
quinone reductase family protein
estExt_Genewise1_v1.C_LG_XI2337
AT4G27270
Q6NQE2
11.8
lipid metabolism.'exotics'(steroids, squalene etc)
2.59477872
0.000811014
quinone reductase family protein
estExt_fgenesh4_pg.C_LG_I1494
AT2G19730
O82204
29.2.1.2.2.28
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L28
1.312587384
0.000495971
60S ribosomal protein L28 (RPL28A)
gw1.I.2068.1
AT5G12300
Q94CL2
35.1.19
not assigned.no ontology.C2 domain-containing protein
1.315766275
0.001225212
C2 domain-containing protein
gw1.142.209.1
AT3G54420
Q9M2U5
20.1
stress.biotic
1.318160606
0.001887833
ATEP3 (Arabidopsis thaliana chitinase class IV); chitinase
encodes an EP3 chitinase that is expressed during somatic embryogenesis in nursing cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.
grail3.0106016001
AT3G22435
#N/A
#N/A
1.319420629
0.002199336
XS domain-containing protein
grail3.0009049102
AT5G19140
Q94BR2
15
metal handling
1.324272555
0.001365733
auxin/aluminum-responsive protein, putative
estExt_fgenesh4_pg.C_1630059
AT2G33860
O23661
27.3.4
RNA.regulation of transcription.ARF, Auxin Response Factor family
1.326769721
0.0000598
ETT (ETTIN); transcription factor
ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.
estExt_fgenesh4_pm.C_LG_VIII0168
AT2G39390
O80626
29.2.1.2.2.35
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35
1.331621828
0.000579136
60S ribosomal protein L35 (RPL35B)
grail3.0032000401
AT4G26850
Q8RWE8
21.2.1.2
redox.ascorbate and glutathione.ascorbate.GDP-L-galactose-hexose-1-phosphate guanyltransferase
1.332898277
0.000316173
VTC2 (VITAMIN C DEFECTIVE 2)
a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.
estExt_fgenesh4_pg.C_LG_X1891
AT2G39460
Q8LD46
29.2.1.2.2.523
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23A
1.334267053
0.000156749
ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome
Encodes a putative ribosomal protein L23a (AtrpL23a).
fgenesh4_pg.C_LG_II000941
AT2G14095
Q8S8A5
35.2
not assigned.unknown
1.338419452
0.001395476
eugene3.00181232
AT3G13580
Q9LHP1
29.2.1.2.2.7
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7
1.339637277
0.000257585
60S ribosomal protein L7 (RPL7D)
estExt_fgenesh4_pg.C_1650014
AT3G62870
Q9LZH9
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
1.348366041
0.000410918
60S ribosomal protein L7A (RPL7aB)
estExt_fgenesh4_pg.C_8990003
AT1G17180
Q9SHH7
26.9
misc.glutathione S transferases
1.349725832
0.002850339
ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
grail3.0038019202
AT1G65930
Q9SRZ6
8.1.4
TCA / org transformation.TCA.IDH
1.351896141
0.000405758
isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative
gw1.I.3503.1
AT5G48760
Q9FKC0
29.2.1.2.2.513
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A
1.368480909
0.001166512
60S ribosomal protein L13A (RPL13aD)
gw1.XVI.1998.1
AT3G11940
P51427
29.2.1.2.1.5
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5
1.369729191
0.000217651
ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome
One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.
eugene3.00151093
AT2G36530
P25696
4.1.13
glycolysis.cytosolic branch.enolase
1.370375607
0.000342052
LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase
Involved in light-dependent cold tolerance and encodes an enolase.
estExt_Genewise1_v1.C_1460016
AT3G14940
Q84VW9
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.371823311
0.002225546
ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase
One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.
gw1.XIII.1296.1
AT1G24140
Q5XF51
29.5.7
protein.degradation.metalloprotease
1.373117919
0.002453274
matrixin family protein
eugene3.00440214
AT5G37310
Q9FHT4
28.99
DNA.unspecified
1.376707447
0.000738014
transporter
estExt_fgenesh4_pg.C_1970027
AT5G24090
P19172
20.1.7
stress.biotic.PR-proteins
1.379390604
0.000182448
acidic endochitinase (CHIB1)
estExt_Genewise1_v1.C_LG_XIV0433
AT3G20000
Q9LHE5
29.3.2
protein.targeting.mitochondria
1.379395035
0.002495933
TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion-selective channel
Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.
gw1.1574.2.1
AT5G47220
O80338
17.5.2
hormone metabolism.ethylene.signal transduction
1.381652974
0.003412573
ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator
Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box?dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.
grail3.0049030302
AT4G00430
Q39196
34.19.1
transport.Major Intrinsic Proteins.PIP
1.387771061
0.002357108
TMP-C (plasma membrane intrinsic protein 1;4); water channel
a member of the plasma membrane intrinsic protein subfamily PIP1.
estExt_fgenesh4_pg.C_LG_V0222
AT3G49910
P51414
29.2.1.2.2.26
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26
1.388400985
0.000477631
60S ribosomal protein L26 (RPL26A)
eugene3.00130015
AT3G05880
Q9ZNQ7
20.2.3
stress.abiotic.drought/salt
1.408500703
0.001689303
RCI2A (RARE-COLD-INDUCIBLE 2A)
Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains.
eugene3.00041172
AT4G34490
O65902
28.99
DNA.unspecified
1.410207558
0.001182988
ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1)
CYCLASE ASSOCIATED PROTEIN
estExt_fgenesh4_pm.C_860049
AT5G61510
Q9FKG8
26.7
misc.oxidases - copper, flavone etc
1.411754432
0.00025816
NADP-dependent oxidoreductase, putative
eugene3.00020474
AT1G22780
29.2.1.2.1.18
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18
1.4182236
0.000861749
PFL (POINTED FIRST LEAVES); structural constituent of ribosome
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.
estExt_Genewise1_v1.C_LG_VII0556
AT3G15210
O80340
17.5.2
hormone metabolism.ethylene.signal transduction
1.42123979
0.003152452
ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.
estExt_Genewise1_v1.C_LG_XVI2622
AT3G09630
Q9SF40
29.2.1.2.2.141
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L4/L1
1.421494431
0.000442876
60S ribosomal protein L4/L1 (RPL4A)
eugene3.00012943
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
1.429950525
0.000405049
60S ribosomal protein L9 (RPL90B)
estExt_Genewise1_v1.C_LG_XIV3883
AT3G07600
Q9SSF0
15
metal handling
1.430736216
0.000296379
heavy-metal-associated domain-containing protein
estExt_Genewise1_v1.C_LG_XI3607
AT1G53310
Q9MAH0
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.430902153
0.002863472
ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
estExt_Genewise1_v1.C_LG_XII1497
AT1G27400
Q93VI3
29.2.1.2.2.17
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17
1.441699055
0.000386615
60S ribosomal protein L17 (RPL17A)
eugene3.00050110
AT5G65300
Q9FKQ7
35.2
not assigned.unknown
1.456165683
0.002185984
estExt_Genewise1_v1.C_LG_XV2068
AT1G67430
P51413
29.2.1.2.2.17
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17
1.458462271
0.000271445
60S ribosomal protein L17 (RPL17B)
grail3.0189002602
AT1G26910
Q08770
29.2.1.2.2.10
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10
1.465692473
0.000935965
60S ribosomal protein L10 (RPL10B)
estExt_Genewise1_v1.C_LG_XI1233
AT3G21690
Q9LVD9
34.99
transport.misc
1.466539931
0.00042043
MATE efflux family protein
estExt_fgenesh4_pm.C_LG_XVI0442
AT4G33070
O82647
5.2
fermentation.PDC
1.470152826
0.000443402
pyruvate decarboxylase, putative
grail3.3669000101
AT1G04480
Q593H7
29.2.1.2.2.23
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23
1.48618676
0.000372732
60S ribosomal protein L23 (RPL23A)
gw1.II.1386.1
AT1G21890
F4HZQ7
33.99
development.unspecified
1.498859719
0.001425312
nodulin MtN21 family protein
eugene3.01850021
AT3G14840
C0LGN2
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
1.503611383
0.001121379
leucine-rich repeat family protein / protein kinase family protein
estExt_fgenesh4_pg.C_LG_VI1248
AT2G42740
P42795
29.2.1.2.2.16
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16
1.528727167
0.001643481
RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome
encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
estExt_fgenesh4_pm.C_LG_I0036
AT3G49120
Q9SMU8
26.12
misc.peroxidases
1.536639456
0.000635615
ATPCB/ATPERX34/PERX34/PRXCB (PEROXIDASE 34); peroxidase
Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
eugene3.00400106
AT4G09320
P39207
23.4.10
nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase
1.565595852
0.000252526
NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase
nucleoside diphosphate kinase type 1 (NDPK1) gene, complete
gw1.XII.485.1
AT3G22370
Q39219
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
1.626837351
0.000292158
AOX1A (alternative oxidase 1A); alternative oxidase
Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.
gw1.I.4215.1
AT2G14610
P33154
20.1
stress.biotic
1.635499408
0.002609035
PR1 (PATHOGENESIS-RELATED GENE 1)
PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.
estExt_fgenesh4_pg.C_LG_XIX0984
AT1G73325
Q9FX28
20.1.7.6.1
stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor
1.659406821
0.003099456
trypsin and protease inhibitor family protein / Kunitz family protein
eugene3.00140920
AT5G13930
P13114
16.8.2.1
secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase
1.661108372
0.002142473
CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
gw1.29.38.1
AT3G49010
P41127
29.2.1.2.2.13
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13
1.182359312
0.000973392
ATBBC1 (breast basic conserved 1); structural constituent of ribosome
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
estExt_fgenesh4_pg.C_LG_VI1104
AT1G09590
Q43291
29.2.1.2.2.21
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21
1.183785676
0.000716923
60S ribosomal protein L21 (RPL21A)
estExt_Genewise1_v1.C_281127
AT3G08590
Q9M9K1
4.1.12
glycolysis.cytosolic branch.phosphoglycerate mutase
1.183946791
0.000488195
2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative
eugene3.00061162
AT3G11940
P51427
29.2.1.2.1.5
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5
1.184185246
0.000918226
ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome
One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.
estExt_Genewise1_v1.C_LG_XVI1631
AT2G42310
Q9SLC8
35.2
not assigned.unknown
1.184316432
0.000941532
estExt_fgenesh4_pg.C_LG_VIII1330
AT2G09990
Q9SK22
29.2.1.2.1.16
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16
1.185098266
0.000390975
40S ribosomal protein S16 (RPS16A)
estExt_Genewise1_v1.C_LG_XIII0228
AT5G05340
Q9FLC0
26.12
misc.peroxidases
1.18572577
0.001289266
peroxidase, putative
fgenesh4_kg.C_LG_VI000029
AT3G02560
Q9M885
29.2.1.2.1.7
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7
1.189608696
0.000856366
40S ribosomal protein S7 (RPS7B)
estExt_Genewise1_v1.C_LG_XVIII1780
AT4G31985
29.2.1.2.2.39
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39
1.190881615
0.000522276
60S ribosomal protein L39 (RPL39C)
estExt_fgenesh4_pg.C_LG_VIII1772
AT4G15520
Q9SUL3
35.1
not assigned.no ontology
1.194584675
0.001031113
tRNA/rRNA methyltransferase (SpoU) family protein
estExt_Genewise1_v1.C_LG_XII0050
AT1G59722
F4ID24
35.2
not assigned.unknown
1.195307811
0.000637625
unknown protein
fgenesh4_pg.C_LG_XVI000455
AT5G06720
Q42578
26.12
misc.peroxidases
1.198566892
0.001248503
peroxidase, putative
estExt_Genewise1_v1.C_LG_VII3915
AT2G18020
P46286
29.2.1.2.2.8
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L8
1.209119234
0.000891673
EMB2296 (EMBRYO DEFECTIVE 2296); structural constituent of ribosome
estExt_fgenesh4_pm.C_LG_X0765
AT1G07070
Q9LMK0
29.2.1.2.2.535
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A
1.211266252
0.000245999
60S ribosomal protein L35a (RPL35aA)
estExt_fgenesh4_pm.C_LG_XVI0194
AT1G09590
Q43291
29.2.1.2.2.21
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21
1.21234231
0.00093525
60S ribosomal protein L21 (RPL21A)
grail3.0053004502
AT5G20290
Q93VG5
29.2.1.2.1.8
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8
1.216554567
0.000600854
40S ribosomal protein S8 (RPS8A)
eugene3.00880022
AT4G13940
O23255
13.2.3.4
amino acid metabolism.degradation.aspartate family.methionine
1.216650771
0.002558397
HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase
Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.
grail3.0039014201
AT2G46370
Q9SKE2
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
1.221119925
0.004137066
JAR1 (JASMONATE RESISTANT 1)
An auxin-induced gene encoding a cytoplasmic localized phytochrome A signaling component protein similar to the GH3 family of proteins Loss of function mutants are defective in a variety of responses to jasmonic acid.
fgenesh4_pg.C_LG_VII001101
AT3G53620
Q9LFF9
23.4.99
nucleotide metabolism.phosphotransfer and pyrophosphatases.misc
1.221186393
0.002631527
inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative
eugene3.00071182
AT4G36220
Q42600
16.2.1.8
secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H
1.222413821
0.000572301
FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase
encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.
gw1.III.1304.1
AT1G72330
Q9LDV4
13.1.1.3.1
amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase
1.223418478
0.001692489
ALAAT2 (ALANINE AMINOTRANSFERASE 2); alanine transaminase
Encodes for alanine aminotransferase ALAAT2.
estExt_fgenesh4_pg.C_6280001
AT4G38830
Q9T0J1
30.2.17
signalling.receptor kinases.DUF 26
1.224491407
0.00155504
protein kinase family protein
estExt_fgenesh4_pm.C_LG_X0137
AT1G04480
Q593H7
29.2.1.2.2.23
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23
1.230239513
0.000267589
60S ribosomal protein L23 (RPL23A)
gw1.XVI.3868.1
AT5G58420
Q8VYK6
29.2.1.2.1.4
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4
1.239154184
0.000137712
40S ribosomal protein S4 (RPS4D)
estExt_fgenesh4_pm.C_LG_XII0488
AT3G45030
29.2.1.2.1.20
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20
1.241436739
0.000553874
40S ribosomal protein S20 (RPS20A)
gw1.II.1879.1
AT1G19600
Q9LN35
3.5
minor CHO metabolism.others
1.242419194
0.001624757
pfkB-type carbohydrate kinase family protein
grail3.0040004901
AT4G30800
O65569
29.2.1.2.1.11
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11
1.243209597
0.000767269
40S ribosomal protein S11 (RPS11B)
eugene3.00060040
AT5G47770
Q09152
16.1.2.9
secondary metabolism.isoprenoids.mevalonate pathway.farnesyl pyrophosphate synthetase
1.247988113
0.00346525
FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase
Encodes a protein with farnesyl diphosphate synthase activity.
estExt_fgenesh4_pg.C_LG_X1328
AT5G49520
Q9FGZ4
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.251422856
0.001791102
WRKY48 (WRKY DNA-binding protein 48); transcription factor
member of WRKY Transcription Factor; Group II-c
eugene3.00021666
AT1G01100
Q8LCW9
29.2.1.2.2.81
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P1
1.251587595
0.000938794
60S acidic ribosomal protein P1 (RPP1A)
estExt_Genewise1_v1.C_LG_X2396
AT3G55120
P41088
16.8.2.2
secondary metabolism.flavonoids.chalcones.chalcone isomerase
1.254897883
0.000722716
TT5 (TRANSPARENT TESTA 5); chalcone isomerase
Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.
estExt_fgenesh4_pg.C_LG_V1341
AT1G04270
Q08112
29.2.1.2.1.15
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15
1.255888609
0.000703504
RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome
Encodes cytosolic ribosomal protein S15.
estExt_fgenesh4_pm.C_LG_III0647
AT3G08580
P31167
34.8
transport.metabolite transporters at the envelope membrane
1.257306315
0.000467565
AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding
mitochondrial ADP/ATP carrier
gw1.VIII.1137.1
AT3G25780
Q9LS01
17.7.1.4
hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase
1.259840439
0.000855091
AOC3 (ALLENE OXIDE CYCLASE 3)
Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.
grail3.0200000501
AT1G72370
Q08682
29.2.1.2.1.31
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA
1.262162975
0.000358184
P40 (40S ribosomal protein SA); structural constituent of ribosome
acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
estExt_fgenesh4_pg.C_LG_II2507
AT3G23990
P29197
29.6
protein.folding
1.26579387
0.000118343
HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding
mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
estExt_fgenesh4_pg.C_280124
AT5G02960
P49201
29.2.1.2.1.23
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23
1.267054811
0.001377934
40S ribosomal protein S23 (RPS23B)
grail3.3538000101
AT2G04540
Q8L3X9
11.1.3
lipid metabolism.FA synthesis and FA elongation.ketoacyl ACP synthase
1.270181287
0.000697045
3-oxoacyl-(acyl-carrier-protein) synthase II, putative
eugene3.00012291
AT5G64260
Q9FE06
30.1
signalling.in sugar and nutrient physiology
1.272126751
0.002951559
phosphate-responsive protein, putative
estExt_fgenesh4_pm.C_1480010
AT2G44350
P20115
8.1.2
TCA / org transformation.TCA.CS
1.27234974
0.001226017
ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase
encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.
eugene3.00002480
AT4G13170
Q9SVR0
29.2.1.2.2.513
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A
1.277336782
0.001162577
60S ribosomal protein L13A (RPL13aC)
grail3.0007017402
AT1G15250
Q8LFH7
29.2.1.2.2.37
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37
1.28488338
0.000891505
60S ribosomal protein L37 (RPL37A)
grail3.0009040502
AT1G59900
P52901
8.1.1.1
TCA / org transformation.TCA.pyruvate DH.E1
1.285300805
0.001292369
AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit); pyruvate dehydrogenase (acetyl-transferring)
encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)
estExt_fgenesh4_pm.C_LG_V0078
AT5G10170
Q9LX12
3.4.3
minor CHO metabolism.myo-inositol.InsP Synthases
1.298593345
0.001331293
inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative
estExt_fgenesh4_pg.C_LG_I1883
AT4G05320
Q8H159
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
1.30217614
0.003162497
UBQ10 (POLYUBIQUITIN 10); protein binding
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
gw1.IV.2431.1
AT5G08350
Q9FTA0
17.1.3
hormone metabolism.abscisic acid.induced-regulated-responsive-activated
1.30243094
0.002680963
GRAM domain-containing protein / ABA-responsive protein-related
estExt_Genewise1_v1.C_LG_IX3421
AT5G20290
Q93VG5
29.2.1.2.1.8
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8
1.30483181
0.000488674
40S ribosomal protein S8 (RPS8A)
grail3.0047006401
AT5G13420
Q9LYR4
7.2.2
OPP.non-reductive PP.transaldolase
1.305794429
0.001516294
transaldolase, putative
estExt_fgenesh4_pm.C_LG_II0304
AT1G43170
P17094
29.2.1.2.2.3
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L3
1.307400878
0.000315075
ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome
Encodes a cytoplasmic ribosomal protein.
estExt_fgenesh4_pm.C_LG_I1230
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
1.31051577
0.000260531
60S ribosomal protein L9 (RPL90B)
estExt_fgenesh4_pg.C_LG_XV1007
AT3G45030
29.2.1.2.1.20
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20
1.076352452
0.001252855
40S ribosomal protein S20 (RPS20A)
estExt_Genewise1_v1.C_LG_XI1809
AT4G05320
Q8H159
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
1.08196861
0.004135403
UBQ10 (POLYUBIQUITIN 10); protein binding
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
grail3.1094000101
AT3G21760
Q9LSY8
26.2
misc.UDP glucosyl and glucoronyl transferases
1.084123182
0.000461778
UDP-glucoronosyl/UDP-glucosyl transferase family protein
grail3.0022037901
AT1G07920
Q0WL56
29.2.4
protein.synthesis.elongation
1.085783402
0.002433175
elongation factor 1-alpha / EF-1-alpha
estExt_fgenesh4_pg.C_LG_I2387
AT5G14040
Q9FMU6
34.9
transport.metabolite transporters at the mitochondrial membrane
1.086953362
0.002015778
mitochondrial phosphate transporter
grail3.0003069401
AT1G21750
Q9XI01
21.1.1
redox.thioredoxin.PDIL
1.087926832
0.002214852
ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9
eugene3.00021246
AT5G26667
O04905
23.4.3
nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase
1.088078263
0.001551768
uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6)
estExt_fgenesh4_pm.C_LG_VIII0532
AT2G01140
Q9ZU52
1.3.6
PS.calvin cycle.aldolase
1.094925481
0.001742969
fructose-bisphosphate aldolase, putative
estExt_fgenesh4_pm.C_LG_V0048
AT4G31700
O48549
29.2.1.2.1.6
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6
1.097123556
0.002812057
RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome
Encodes a putative ribosomal protein S6 (rps6).
estExt_fgenesh4_pm.C_400015
AT4G16720
O23515
29.2.1.2.2.15
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L15
1.100769475
0.001462565
60S ribosomal protein L15 (RPL15A)
estExt_Genewise1_v1.C_LG_X4452
AT4G27090
Q9T043
29.2.1.2.2.14
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L14
1.101706502
0.002068203
60S ribosomal protein L14 (RPL14B)
gw1.V.3607.1
AT4G35630
Q96255
13.1.5.1.2
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase
1.102723209
0.000305522
PSAT (phosphoserine aminotransferase); phosphoserine transaminase
Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway.
estExt_fgenesh4_pm.C_1220043
AT2G17360
Q93VH9
29.2.1.2.1.4
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4
1.104204723
0.001680145
40S ribosomal protein S4 (RPS4A)
estExt_fgenesh4_pg.C_LG_IX0938
AT1G74050
Q9C9C5
29.2.1.2.2.6
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6
1.105458615
0.000958921
60S ribosomal protein L6 (RPL6C)
estExt_Genewise1_v1.C_LG_VI2460
AT1G15250
Q8LFH7
29.2.1.2.2.37
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37
1.106130331
0.000479361
60S ribosomal protein L37 (RPL37A)
grail3.0090013401
AT4G39200
Q9T029
29.2.1.2.1.25
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25
1.106603433
0.002167119
40S ribosomal protein S25 (RPS25E)
estExt_fgenesh4_pg.C_LG_X0832
AT2G09990
Q9SK22
29.2.1.2.1.16
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16
1.106654344
0.001084941
40S ribosomal protein S16 (RPS16A)
eugene3.00061661
AT5G18200
Q9FK51
2.1.2.60
major CHO metabolism.synthesis.starch.ADP Glucose Phosphorylase
1.107947766
0.001158218
UDP-glucose:hexose-1-phosphate uridylyltransferase
estExt_Genewise1_v1.C_LG_XVI2163
AT1G70600
P49637
29.2.1.2.2.527
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A
1.10976888
0.00111532
60S ribosomal protein L27A (RPL27aC)
eugene3.01330055
AT3G05590
P42791
29.2.1.2.2.18
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18
1.111001547
0.000243188
RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Encodes cytoplasmic ribosomal protein L18.
gw1.IV.2659.1
AT1G29280
Q9LP56
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.116560181
0.00212493
WRKY65 (WRKY DNA-binding protein 65); transcription factor
member of WRKY Transcription Factor; Group II-e
estExt_Genewise1_v1.C_LG_XVI1732
AT2G41840
P49688
29.2.1.2.1.2
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S2
1.116587977
0.001593485
40S ribosomal protein S2 (RPS2C)
eugene3.00180798
AT2G36460
Q9SJQ9
4.1.10
glycolysis.cytosolic branch.aldolase
1.116983785
0.00306676
fructose-bisphosphate aldolase, putative
gw1.X.5793.1
AT3G04840
Q9CAV0
29.2.1.2.1.53
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A
1.117617768
0.000286909
40S ribosomal protein S3A (RPS3aA)
grail3.0001009902
AT1G36240
Q9C8F7
29.2.1.2.2.30
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L30
1.118453358
0.000843765
60S ribosomal protein L30 (RPL30A)
eugene3.00051184
AT1G22780
29.2.1.2.1.18
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18
1.118762759
0.000986938
PFL (POINTED FIRST LEAVES); structural constituent of ribosome
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.
estExt_Genewise1_v1.C_LG_XVI2419
AT2G36170
B9DHA6
29.2.1.2.2.40
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40
1.120529961
0.001181997
ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)
estExt_fgenesh4_pg.C_LG_VIII0532
AT1G07070
Q9LMK0
29.2.1.2.2.535
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A
1.121594393
0.001298819
60S ribosomal protein L35a (RPL35aA)
eugene3.00140097
AT3G43980
Q680P8
29.2.1.2.1.29
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S29
1.125629671
0.001984081
40S ribosomal protein S29 (RPS29A)
eugene3.00012536
AT3G27260
Q9LK27
27.3.52
RNA.regulation of transcription.Global transcription factor group
1.126081211
0.002068701
GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding
Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain
grail3.0019011601
AT2G27530
P59230
29.2.1.2.2.510
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A
1.130813429
0.001283667
60S ribosomal protein L10A (RPL10aB)
fgenesh4_pm.C_LG_IX000091
AT5G22770
Q8LPL6
31.4
cell.vesicle transport
1.133478298
0.00270556
ALPHA-ADR (ALPHA-ADAPTIN); binding / structural molecule
eugene3.00280289
AT3G52990
A8MR07
4.1.14
glycolysis.cytosolic branch.pyruvate kinase (PK)
1.135433708
0.00101944
pyruvate kinase, putative
estExt_Genewise1_v1.C_1230260
AT3G02560
Q9M885
29.2.1.2.1.7
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7
1.135564344
0.000698042
40S ribosomal protein S7 (RPS7B)
estExt_fgenesh4_pg.C_LG_III0669
AT5G39850
Q9FLF0
29.2.1.2.1.9
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9
1.139115252
0.000506861
40S ribosomal protein S9 (RPS9C)
estExt_fgenesh4_pm.C_LG_XII0164
AT1G18080
O24456
33.99
development.unspecified
1.147952304
0.001517642
ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding
Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.
estExt_Genewise1_v1.C_LG_III0629
AT1G27350
35.2
not assigned.unknown
1.155042276
0.002015248