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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0011005701
AT3G62710
10.6.1
cell wall.degradation.cellulases and beta -1,4-glucanases
2.706956745
0.000997186
glycosyl hydrolase family 3 protein
estExt_fgenesh4_pg.C_LG_VIII1530
AT2G29420
Q9ZW24
26.9
misc.glutathione S transferases
2.73432302
0.000370051
ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.
gw1.XII.1434.1
AT3G47780
Q9STT5
34.16
transport.ABC transporters and multidrug resistance systems
2.769225981
0.000116754
ATATH6 (ABC2 homolog 6); ATPase, coupled to transmembrane movement of substances
member of ATH subfamily
eugene3.52220001
AT3G25170
Q0V822
30.8
signalling.misc
2.7727314
0.0000406
RALFL26 (RALF-LIKE 26)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
estExt_fgenesh4_pg.C_LG_XIV1000
AT5G14780
Q9S7E4
25.10
C1-metabolism.formate dehydrogenase
2.785606417
0.00078974
FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor
Encodes a NAD-dependent formate dehydrogenase.
grail3.11299000101
AT1G17170
Q9SHH6
26.9
misc.glutathione S transferases
2.817700193
0.000286147
ATGSTU24 (Arabidopsis thaliana Glutathione S-transferase (class tau) 24); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
fgenesh4_pg.C_LG_X001297
AT3G57270
Q9M2M0
26.4.1
misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase
2.819907996
0.00336622
BG1 (BETA-1,3-GLUCANASE 1); hydrolase, hydrolyzing O-glycosyl compounds
encodes a member of glycosyl hydrolase family 17
eugene3.00070973
AT2G23620
Q8S8S9
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
2.836263836
0.003333474
esterase, putative
grail3.0004034803
AT4G37970
O65621
16.2.1.10
secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD
3.065250995
0.000432311
mannitol dehydrogenase, putative
estExt_Genewise1_v1.C_LG_III0308
AT1G64160
Q9SH66
20.1.7
stress.biotic.PR-proteins
3.165020824
0.000353718
disease resistance-responsive family protein / dirigent family protein
estExt_fgenesh4_pg.C_770059
AT1G24020
Q93VR4
20.2.99
stress.abiotic.unspecified
3.46508963
0.0000178
Bet v I allergen family protein
estExt_fgenesh4_pm.C_LG_IV0566
AT3G12500
P19171
20.1
stress.biotic
3.778836487
0.000422085
ATHCHIB (BASIC CHITINASE); chitinase
encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
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