Species & Dataset
Experiment
Foliar Ozone Injury
-
Populus trichocarpa
-
Common name: Poplar cottonwood
-
Family: Salicaceae
-
Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
-
Tissue: Shoot leaves
-
Ozone concentration: 16.7 nL L-1 (Control)
-
93.1 nL L-1 (Treatment)
-
Ozone exposure: Whole experimental period
-
Sampling time: End of exposure period
-
Platform: Microarray
-
Year of study: 2010
-
Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
grail3.0011005701 | AT3G62710 | 10.6.1 | cell wall.degradation.cellulases and beta -1,4-glucanases | 2.706956745 | 0.000997186 | glycosyl hydrolase family 3 protein | ||
estExt_fgenesh4_pg.C_LG_VIII1530 | AT2G29420 | Q9ZW24 | 26.9 | misc.glutathione S transferases | 2.73432302 | 0.000370051 | ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. |
gw1.XII.1434.1 | AT3G47780 | Q9STT5 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.769225981 | 0.000116754 | ATATH6 (ABC2 homolog 6); ATPase, coupled to transmembrane movement of substances | member of ATH subfamily |
eugene3.52220001 | AT3G25170 | Q0V822 | 30.8 | signalling.misc | 2.7727314 | 0.0000406 | RALFL26 (RALF-LIKE 26) | Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
estExt_fgenesh4_pg.C_LG_XIV1000 | AT5G14780 | Q9S7E4 | 25.10 | C1-metabolism.formate dehydrogenase | 2.785606417 | 0.00078974 | FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor | Encodes a NAD-dependent formate dehydrogenase. |
grail3.11299000101 | AT1G17170 | Q9SHH6 | 26.9 | misc.glutathione S transferases | 2.817700193 | 0.000286147 | ATGSTU24 (Arabidopsis thaliana Glutathione S-transferase (class tau) 24); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
fgenesh4_pg.C_LG_X001297 | AT3G57270 | Q9M2M0 | 26.4.1 | misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase | 2.819907996 | 0.00336622 | BG1 (BETA-1,3-GLUCANASE 1); hydrolase, hydrolyzing O-glycosyl compounds | encodes a member of glycosyl hydrolase family 17 |
eugene3.00070973 | AT2G23620 | Q8S8S9 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.836263836 | 0.003333474 | esterase, putative | |
grail3.0004034803 | AT4G37970 | O65621 | 16.2.1.10 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD | 3.065250995 | 0.000432311 | mannitol dehydrogenase, putative | |
estExt_Genewise1_v1.C_LG_III0308 | AT1G64160 | Q9SH66 | 20.1.7 | stress.biotic.PR-proteins | 3.165020824 | 0.000353718 | disease resistance-responsive family protein / dirigent family protein | |
estExt_fgenesh4_pg.C_770059 | AT1G24020 | Q93VR4 | 20.2.99 | stress.abiotic.unspecified | 3.46508963 | 0.0000178 | Bet v I allergen family protein | |
estExt_fgenesh4_pm.C_LG_IV0566 | AT3G12500 | P19171 | 20.1 | stress.biotic | 3.778836487 | 0.000422085 | ATHCHIB (BASIC CHITINASE); chitinase | encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. |