Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: ​ End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK
Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
​
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
---|---|---|---|---|---|---|---|---|
grail3.0011005701 | AT3G62710 | 10.6.1 | cell wall.degradation.cellulases and beta -1,4-glucanases | 2.706956745 | 0.000997186 | glycosyl hydrolase family 3 protein | ||
estExt_fgenesh4_pg.C_LG_VIII1530 | AT2G29420 | Q9ZW24 | 26.9 | misc.glutathione S transferases | 2.73432302 | 0.000370051 | ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. |
gw1.XII.1434.1 | AT3G47780 | Q9STT5 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.769225981 | 0.000116754 | ATATH6 (ABC2 homolog 6); ATPase, coupled to transmembrane movement of substances | member of ATH subfamily |
eugene3.52220001 | AT3G25170 | Q0V822 | 30.8 | signalling.misc | 2.7727314 | 0.0000406 | RALFL26 (RALF-LIKE 26) | Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
estExt_fgenesh4_pg.C_LG_XIV1000 | AT5G14780 | Q9S7E4 | 25.10 | C1-metabolism.formate dehydrogenase | 2.785606417 | 0.00078974 | FDH (FORMATE DEHYDROGENASE); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor | Encodes a NAD-dependent formate dehydrogenase. |
grail3.11299000101 | AT1G17170 | Q9SHH6 | 26.9 | misc.glutathione S transferases | 2.817700193 | 0.000286147 | ATGSTU24 (Arabidopsis thaliana Glutathione S-transferase (class tau) 24); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
fgenesh4_pg.C_LG_X001297 | AT3G57270 | Q9M2M0 | 26.4.1 | misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase | 2.819907996 | 0.00336622 | BG1 (BETA-1,3-GLUCANASE 1); hydrolase, hydrolyzing O-glycosyl compounds | encodes a member of glycosyl hydrolase family 17 |
eugene3.00070973 | AT2G23620 | Q8S8S9 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.836263836 | 0.003333474 | esterase, putative | |
grail3.0004034803 | AT4G37970 | O65621 | 16.2.1.10 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD | 3.065250995 | 0.000432311 | mannitol dehydrogenase, putative | |
estExt_Genewise1_v1.C_LG_III0308 | AT1G64160 | Q9SH66 | 20.1.7 | stress.biotic.PR-proteins | 3.165020824 | 0.000353718 | disease resistance-responsive family protein / dirigent family protein | |
estExt_fgenesh4_pg.C_770059 | AT1G24020 | Q93VR4 | 20.2.99 | stress.abiotic.unspecified | 3.46508963 | 0.0000178 | Bet v I allergen family protein | |
estExt_fgenesh4_pm.C_LG_IV0566 | AT3G12500 | P19171 | 20.1 | stress.biotic | 3.778836487 | 0.000422085 | ATHCHIB (BASIC CHITINASE); chitinase | encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. |
eugene3.00070346 | AT1G73260 | Q8RXD5 | 20.1.7.6.1 | stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor | 4.372610679 | 0.000549868 | trypsin and protease inhibitor family protein / Kunitz family protein | |
estExt_Genewise1_v1.C_LG_XVI3242 | AT2G37770 | Q0PGJ6 | 3.5 | minor CHO metabolism.others | 1.664496372 | 0.001768656 | oxidoreductase | |
estExt_Genewise1_v1.C_LG_XIV2782 | AT3G63010 | Q9LYC1 | 17.6.2 | hormone metabolism.gibberelin.signal transduction | 1.675410238 | 0.003971384 | ATGID1B/GID1B (GA INSENSITIVE DWARF1B) | Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. |
fgenesh4_pm.C_LG_XV000479 | AT5G52470 | Q9FEF8 | 27.1 | RNA.processing | 1.696377524 | 0.000299527 | FIB1 (FIBRILLARIN 1) | encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. |
estExt_Genewise1_v1.C_LG_IX3674 | AT3G07600 | Q9SSF0 | 15 | metal handling | 1.697540864 | 0.001132159 | heavy-metal-associated domain-containing protein | |
eugene3.00100655 | AT2G27380 | Q9ZQI0 | 35.1.42 | not assigned.no ontology.proline rich family | 1.706860996 | 0.000443601 | ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) | Encodes an extensin like gene involved in seed germination. |
grail3.19938000101 | AT3G51240 | Q9S818 | 16.8.3.2 | secondary metabolism.flavonoids.dihydroflavonols.flavanone 3-hydroxylase | 1.723826327 | 0.000985708 | F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase | Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. |
grail3.0036009801 | AT2G29420 | Q9ZW24 | 26.9 | misc.glutathione S transferases | 1.724551335 | 0.002865151 | ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. |
estExt_Genewise1_v1.C_LG_XIV0250 | AT1G02930 | P42760 | 26.9 | misc.glutathione S transferases | 1.750390524 | 0.002383737 | ATGSTF6 (EARLY RESPONSIVE TO DEHYDRATION 11); glutathione transferase | Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). |
estExt_fgenesh4_pm.C_LG_XIX0276 | AT1G26910 | Q08770 | 29.2.1.2.2.10 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10 | 1.761304196 | 0.000629799 | 60S ribosomal protein L10 (RPL10B) | |
grail3.5873000103 | AT5G61030 | Q9FNR1 | 27.4 | RNA.RNA binding | 1.768032569 | 0.000230029 | GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding | encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. |
grail3.0024029101 | AT2G26190 | O64851 | 30.3 | signalling.calcium | 1.776028609 | 0.000867401 | calmodulin-binding family protein | |
grail3.0018023901 | AT4G11820 | P54873 | 16.1.2.2 | secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase | 1.782933384 | 0.001039251 | BAP1 (hydroxymethylglutaryl-CoA synthase) | Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. |
grail3.0055008002 | AT4G27270 | Q6NQE2 | 11.8 | lipid metabolism.'exotics'(steroids, squalene etc) | 1.786026576 | 0.00035952 | quinone reductase family protein | |
estExt_fgenesh4_pm.C_1230010 | AT3G02360 | Q9FWA3 | 7.1.3 | OPP.oxidative PP.6-phosphogluconate dehydrogenase | 1.797127843 | 0.000702691 | 6-phosphogluconate dehydrogenase family protein | |
estExt_Genewise1_v1.C_LG_II0799 | AT5G42800 | P51102 | 16.8.3.1 | secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase | 1.818976687 | 0.001211493 | DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase | dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. |
gw1.131.45.1 | AT3G62020 | Q9M263 | 20.2.99 | stress.abiotic.unspecified | 1.82091624 | 0.0000954 | GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir | germin-like protein (GLP10) |
estExt_Genewise1_v1.C_280658 | AT2G37040 | P35510 | 16.2.1.1 | secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL | 1.830293095 | 0.000879196 | PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase | encodes a protein similar to phenylalanine ammonia-lyase |
estExt_fgenesh4_pm.C_LG_I1023 | AT4G34050 | O49499 | 16.2.1.6 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT | 1.832029745 | 0.00354435 | caffeoyl-CoA 3-O-methyltransferase, putative | |
estExt_Genewise1_v1.C_LG_IV3894 | AT3G02720 | Q9M8R4 | 35.1 | not assigned.no ontology | 1.835552622 | 0.002029597 | DJ-1 family protein / protease-related | |
eugene3.00180672 | AT5G24105 | Q8L9T8 | 35.2 | not assigned.unknown | 1.855190001 | 0.003317554 | AGP41 | Encodes a putative arabinogalactan-protein (AGP41). |
grail3.0092008201 | AT2G38470 | Q8S8P5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.869543236 | 0.000524977 | WRKY33 (WRKY DNA-binding protein 33); transcription factor | Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. |
gw1.II.2573.1 | AT3G19580 | Q9SSW2 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 1.873219437 | 0.001638316 | AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding | Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. |
eugene3.00150904 | AT5G07440 | Q38946 | 12.3.1 | N-metabolism.N-degradation.glutamate dehydrogenase | 1.903723715 | 0.00015378 | GDH2 (GLUTAMATE DEHYDROGENASE 2); oxidoreductase | Encodes the alpha-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. |
eugene3.00121130 | AT5G52390 | Q9FHC1 | 30.1 | signalling.in sugar and nutrient physiology | 1.903790278 | 0.000716713 | photoassimilate-responsive protein, putative | |
estExt_fgenesh4_pg.C_LG_X0484 | AT3G04120 | P25858 | 4.1.8 | glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH) | 1.915430248 | 0.000471439 | GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase | encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. |
grail3.0009044702 | AT1G17710 | Q9FZ62 | 26.13 | misc.acid and other phosphatases | 1.949624384 | 0.000035 | phosphoric monoester hydrolase | |
eugene3.00160180 | AT3G09270 | Q9SR36 | 26.9 | misc.glutathione S transferases | 1.970440475 | 0.000108888 | ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
fgenesh4_pg.C_scaffold_29000012 | AT1G72310 | Q9XF63 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 1.97132437 | 0.000165563 | ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding | Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). |
grail3.0023033201 | AT5G01600 | Q39101 | 15.2 | metal handling.binding, chelation and storage | 1.979132378 | 0.000257495 | ATFER1 (ferretin 1); ferric iron binding | Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. |
estExt_fgenesh4_pg.C_280066 | AT3G43190 | Q9LXL5 | 2.2.1.5 | major CHO metabolism.degradation.sucrose.Susy | 2.024956669 | 0.0000318 | SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups | Encodes a protein with sucrose synthase activity (SUS4). |
estExt_Genewise1_v1.C_LG_XI1801 | AT1G24020 | Q93VR4 | 20.2.99 | stress.abiotic.unspecified | 2.031395596 | 0.000833617 | Bet v I allergen family protein | |
estExt_Genewise1_v1.C_LG_I1127 | AT1G07440 | P0DKI3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.057299581 | 0.000364068 | tropinone reductase, putative / tropine dehydrogenase, putative | |
gw1.XIV.108.1 | AT5G43940 | Q96533 | 26.11 | misc.alcohol dehydrogenases | 2.10395321 | 0.002171075 | ADH2 (ALCOHOL DEHYDROGENASE 2); formaldehyde dehydrogenase (glutathione) | Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. |
estExt_Genewise1_v1.C_LG_II4045 | AT3G07220 | Q9SFV2 | 27.3.48 | RNA.regulation of transcription.FHA transcription factor | 2.118279366 | 0.004011266 | transcriptional activator, putative | |
gw1.IX.2492.1 | AT3G43740 | Q6NQP4 | 35.1 | not assigned.no ontology | 2.15277752 | 0.0000309 | leucine-rich repeat family protein | |
eugene3.00050086 | AT1G01720 | Q39013 | 33.99 | development.unspecified | 2.186336029 | 0.002696686 | ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor | belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. |
gw1.I.9073.1 | AT4G11650 | P50700 | 20.2 | stress.abiotic | 2.219216184 | 0.003573415 | ATOSM34 (OSMOTIN 34) | osmotin-like protein |
fgenesh4_pg.C_scaffold_481000004 | AT5G45540 | Q9FHI2 | 35.2 | not assigned.unknown | 2.220102477 | 0.002360497 | ||
estExt_Genewise1_v1.C_62380001 | AT2G14610 | P33154 | 20.1 | stress.biotic | 2.257416871 | 0.001274801 | PR1 (PATHOGENESIS-RELATED GENE 1) | PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. |
estExt_Genewise1_v1.C_14600006 | AT1G24020 | Q93VR4 | 20.2.99 | stress.abiotic.unspecified | 2.26430473 | 0.000344671 | Bet v I allergen family protein | |
estExt_Genewise1_v1.C_13540001 | AT5G01600 | Q39101 | 15.2 | metal handling.binding, chelation and storage | 2.28131629 | 0.0000146 | ATFER1 (ferretin 1); ferric iron binding | Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. |
estExt_fgenesh4_pg.C_LG_XIII0199 | AT3G04720 | P43082 | 20.1 | stress.biotic | 2.293176327 | 0.001332712 | PR4 (PATHOGENESIS-RELATED 4) | Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. |
estExt_fgenesh4_pg.C_LG_I0450 | AT5G13930 | P13114 | 16.8.2.1 | secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase | 2.322072461 | 0.000677159 | CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase | Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. |
estExt_Genewise1_v1.C_LG_IV0305 | AT3G02230 | Q9SRT9 | 10.5.5 | cell wall.cell wall proteins.RGP | 2.363529254 | 0.001793986 | RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) | reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis |
estExt_Genewise1_v1.C_LG_V0127 | AT4G19950 | Q6DBH7 | 35.2 | not assigned.unknown | 2.402587833 | 0.000559228 | ||
gw1.5658.2.1 | AT5G42510 | Q9FIG6 | 20.1.7 | stress.biotic.PR-proteins | 2.431470159 | 0.000812747 | disease resistance-responsive family protein | |
gw1.I.8918.1 | AT4G11650 | P50700 | 20.2 | stress.abiotic | 2.470862344 | 0.003022215 | ATOSM34 (OSMOTIN 34) | osmotin-like protein |
gw1.182.27.1 | AT1G08170 | Q9SGE3 | 28.1.3.2.2 | DNA.synthesis/chromatin structure.histone.core.H2B | 2.532096813 | 0.000275032 | histone H2B family protein | |
estExt_Genewise1_v1.C_LG_XI0270 | AT4G27270 | Q6NQE2 | 11.8 | lipid metabolism.'exotics'(steroids, squalene etc) | 2.591935893 | 0.000274645 | quinone reductase family protein | |
estExt_Genewise1_v1.C_LG_XI2337 | AT4G27270 | Q6NQE2 | 11.8 | lipid metabolism.'exotics'(steroids, squalene etc) | 2.59477872 | 0.000811014 | quinone reductase family protein | |
estExt_fgenesh4_pg.C_LG_I1494 | AT2G19730 | O82204 | 29.2.1.2.2.28 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L28 | 1.312587384 | 0.000495971 | 60S ribosomal protein L28 (RPL28A) | |
gw1.I.2068.1 | AT5G12300 | Q94CL2 | 35.1.19 | not assigned.no ontology.C2 domain-containing protein | 1.315766275 | 0.001225212 | C2 domain-containing protein | |
gw1.142.209.1 | AT3G54420 | Q9M2U5 | 20.1 | stress.biotic | 1.318160606 | 0.001887833 | ATEP3 (Arabidopsis thaliana chitinase class IV); chitinase | encodes an EP3 chitinase that is expressed during somatic embryogenesis in nursing cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. |
grail3.0106016001 | AT3G22435 | #N/A | #N/A | 1.319420629 | 0.002199336 | XS domain-containing protein | ||
grail3.0009049102 | AT5G19140 | Q94BR2 | 15 | metal handling | 1.324272555 | 0.001365733 | auxin/aluminum-responsive protein, putative | |
estExt_fgenesh4_pg.C_1630059 | AT2G33860 | O23661 | 27.3.4 | RNA.regulation of transcription.ARF, Auxin Response Factor family | 1.326769721 | 0.0000598 | ETT (ETTIN); transcription factor | ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. |
estExt_fgenesh4_pm.C_LG_VIII0168 | AT2G39390 | O80626 | 29.2.1.2.2.35 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35 | 1.331621828 | 0.000579136 | 60S ribosomal protein L35 (RPL35B) | |
grail3.0032000401 | AT4G26850 | Q8RWE8 | 21.2.1.2 | redox.ascorbate and glutathione.ascorbate.GDP-L-galactose-hexose-1-phosphate guanyltransferase | 1.332898277 | 0.000316173 | VTC2 (VITAMIN C DEFECTIVE 2) | a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. |
estExt_fgenesh4_pg.C_LG_X1891 | AT2G39460 | Q8LD46 | 29.2.1.2.2.523 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23A | 1.334267053 | 0.000156749 | ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome | Encodes a putative ribosomal protein L23a (AtrpL23a). |
fgenesh4_pg.C_LG_II000941 | AT2G14095 | Q8S8A5 | 35.2 | not assigned.unknown | 1.338419452 | 0.001395476 | ||
eugene3.00181232 | AT3G13580 | Q9LHP1 | 29.2.1.2.2.7 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7 | 1.339637277 | 0.000257585 | 60S ribosomal protein L7 (RPL7D) | |
estExt_fgenesh4_pg.C_1650014 | AT3G62870 | Q9LZH9 | 29.2.1.2.2.57 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A | 1.348366041 | 0.000410918 | 60S ribosomal protein L7A (RPL7aB) | |
estExt_fgenesh4_pg.C_8990003 | AT1G17180 | Q9SHH7 | 26.9 | misc.glutathione S transferases | 1.349725832 | 0.002850339 | ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
grail3.0038019202 | AT1G65930 | Q9SRZ6 | 8.1.4 | TCA / org transformation.TCA.IDH | 1.351896141 | 0.000405758 | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative | |
gw1.I.3503.1 | AT5G48760 | Q9FKC0 | 29.2.1.2.2.513 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A | 1.368480909 | 0.001166512 | 60S ribosomal protein L13A (RPL13aD) | |
gw1.XVI.1998.1 | AT3G11940 | P51427 | 29.2.1.2.1.5 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5 | 1.369729191 | 0.000217651 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant. |
eugene3.00151093 | AT2G36530 | P25696 | 4.1.13 | glycolysis.cytosolic branch.enolase | 1.370375607 | 0.000342052 | LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase | Involved in light-dependent cold tolerance and encodes an enolase. |
estExt_Genewise1_v1.C_1460016 | AT3G14940 | Q84VW9 | 4.1.15 | glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC) | 1.371823311 | 0.002225546 | ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase | One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. |
gw1.XIII.1296.1 | AT1G24140 | Q5XF51 | 29.5.7 | protein.degradation.metalloprotease | 1.373117919 | 0.002453274 | matrixin family protein | |
eugene3.00440214 | AT5G37310 | Q9FHT4 | 28.99 | DNA.unspecified | 1.376707447 | 0.000738014 | transporter | |
estExt_fgenesh4_pg.C_1970027 | AT5G24090 | P19172 | 20.1.7 | stress.biotic.PR-proteins | 1.379390604 | 0.000182448 | acidic endochitinase (CHIB1) | |
estExt_Genewise1_v1.C_LG_XIV0433 | AT3G20000 | Q9LHE5 | 29.3.2 | protein.targeting.mitochondria | 1.379395035 | 0.002495933 | TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion-selective channel | Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. |
gw1.1574.2.1 | AT5G47220 | O80338 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 1.381652974 | 0.003412573 | ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator | Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box?dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. |
grail3.0049030302 | AT4G00430 | Q39196 | 34.19.1 | transport.Major Intrinsic Proteins.PIP | 1.387771061 | 0.002357108 | TMP-C (plasma membrane intrinsic protein 1;4); water channel | a member of the plasma membrane intrinsic protein subfamily PIP1. |
estExt_fgenesh4_pg.C_LG_V0222 | AT3G49910 | P51414 | 29.2.1.2.2.26 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26 | 1.388400985 | 0.000477631 | 60S ribosomal protein L26 (RPL26A) | |
eugene3.00130015 | AT3G05880 | Q9ZNQ7 | 20.2.3 | stress.abiotic.drought/salt | 1.408500703 | 0.001689303 | RCI2A (RARE-COLD-INDUCIBLE 2A) | Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains. |
eugene3.00041172 | AT4G34490 | O65902 | 28.99 | DNA.unspecified | 1.410207558 | 0.001182988 | ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1) | CYCLASE ASSOCIATED PROTEIN |
estExt_fgenesh4_pm.C_860049 | AT5G61510 | Q9FKG8 | 26.7 | misc.oxidases - copper, flavone etc | 1.411754432 | 0.00025816 | NADP-dependent oxidoreductase, putative | |
eugene3.00020474 | AT1G22780 | 29.2.1.2.1.18 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18 | 1.4182236 | 0.000861749 | PFL (POINTED FIRST LEAVES); structural constituent of ribosome | S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. | |
estExt_Genewise1_v1.C_LG_VII0556 | AT3G15210 | O80340 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 1.42123979 | 0.003152452 | ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor | Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. |
estExt_Genewise1_v1.C_LG_XVI2622 | AT3G09630 | Q9SF40 | 29.2.1.2.2.141 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L4/L1 | 1.421494431 | 0.000442876 | 60S ribosomal protein L4/L1 (RPL4A) | |
eugene3.00012943 | AT1G33120 | 29.2.1.2.2.9 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 | 1.429950525 | 0.000405049 | 60S ribosomal protein L9 (RPL90B) | ||
estExt_Genewise1_v1.C_LG_XIV3883 | AT3G07600 | Q9SSF0 | 15 | metal handling | 1.430736216 | 0.000296379 | heavy-metal-associated domain-containing protein | |
estExt_Genewise1_v1.C_LG_XI3607 | AT1G53310 | Q9MAH0 | 4.1.15 | glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC) | 1.430902153 | 0.002863472 | ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase | Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. |
estExt_Genewise1_v1.C_LG_XII1497 | AT1G27400 | Q93VI3 | 29.2.1.2.2.17 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17 | 1.441699055 | 0.000386615 | 60S ribosomal protein L17 (RPL17A) | |
eugene3.00050110 | AT5G65300 | Q9FKQ7 | 35.2 | not assigned.unknown | 1.456165683 | 0.002185984 | ||
estExt_Genewise1_v1.C_LG_XV2068 | AT1G67430 | P51413 | 29.2.1.2.2.17 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17 | 1.458462271 | 0.000271445 | 60S ribosomal protein L17 (RPL17B) | |
grail3.0189002602 | AT1G26910 | Q08770 | 29.2.1.2.2.10 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10 | 1.465692473 | 0.000935965 | 60S ribosomal protein L10 (RPL10B) | |
estExt_Genewise1_v1.C_LG_XI1233 | AT3G21690 | Q9LVD9 | 34.99 | transport.misc | 1.466539931 | 0.00042043 | MATE efflux family protein | |
estExt_fgenesh4_pm.C_LG_XVI0442 | AT4G33070 | O82647 | 5.2 | fermentation.PDC | 1.470152826 | 0.000443402 | pyruvate decarboxylase, putative | |
grail3.3669000101 | AT1G04480 | Q593H7 | 29.2.1.2.2.23 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23 | 1.48618676 | 0.000372732 | 60S ribosomal protein L23 (RPL23A) | |
gw1.II.1386.1 | AT1G21890 | F4HZQ7 | 33.99 | development.unspecified | 1.498859719 | 0.001425312 | nodulin MtN21 family protein | |
eugene3.01850021 | AT3G14840 | C0LGN2 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 1.503611383 | 0.001121379 | leucine-rich repeat family protein / protein kinase family protein | |
estExt_fgenesh4_pg.C_LG_VI1248 | AT2G42740 | P42795 | 29.2.1.2.2.16 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16 | 1.528727167 | 0.001643481 | RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome | encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. |
estExt_fgenesh4_pm.C_LG_I0036 | AT3G49120 | Q9SMU8 | 26.12 | misc.peroxidases | 1.536639456 | 0.000635615 | ATPCB/ATPERX34/PERX34/PRXCB (PEROXIDASE 34); peroxidase | Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. |
eugene3.00400106 | AT4G09320 | P39207 | 23.4.10 | nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase | 1.565595852 | 0.000252526 | NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase | nucleoside diphosphate kinase type 1 (NDPK1) gene, complete |
gw1.XII.485.1 | AT3G22370 | Q39219 | 9.4 | mitochondrial electron transport / ATP synthesis.alternative oxidase | 1.626837351 | 0.000292158 | AOX1A (alternative oxidase 1A); alternative oxidase | Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. |
gw1.I.4215.1 | AT2G14610 | P33154 | 20.1 | stress.biotic | 1.635499408 | 0.002609035 | PR1 (PATHOGENESIS-RELATED GENE 1) | PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. |
estExt_fgenesh4_pg.C_LG_XIX0984 | AT1G73325 | Q9FX28 | 20.1.7.6.1 | stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor | 1.659406821 | 0.003099456 | trypsin and protease inhibitor family protein / Kunitz family protein | |
eugene3.00140920 | AT5G13930 | P13114 | 16.8.2.1 | secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase | 1.661108372 | 0.002142473 | CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase | Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. |
gw1.29.38.1 | AT3G49010 | P41127 | 29.2.1.2.2.13 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13 | 1.182359312 | 0.000973392 | ATBBC1 (breast basic conserved 1); structural constituent of ribosome | Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). |
estExt_fgenesh4_pg.C_LG_VI1104 | AT1G09590 | Q43291 | 29.2.1.2.2.21 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21 | 1.183785676 | 0.000716923 | 60S ribosomal protein L21 (RPL21A) | |
estExt_Genewise1_v1.C_281127 | AT3G08590 | Q9M9K1 | 4.1.12 | glycolysis.cytosolic branch.phosphoglycerate mutase | 1.183946791 | 0.000488195 | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative | |
eugene3.00061162 | AT3G11940 | P51427 | 29.2.1.2.1.5 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5 | 1.184185246 | 0.000918226 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant. |
estExt_Genewise1_v1.C_LG_XVI1631 | AT2G42310 | Q9SLC8 | 35.2 | not assigned.unknown | 1.184316432 | 0.000941532 | ||
estExt_fgenesh4_pg.C_LG_VIII1330 | AT2G09990 | Q9SK22 | 29.2.1.2.1.16 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16 | 1.185098266 | 0.000390975 | 40S ribosomal protein S16 (RPS16A) | |
estExt_Genewise1_v1.C_LG_XIII0228 | AT5G05340 | Q9FLC0 | 26.12 | misc.peroxidases | 1.18572577 | 0.001289266 | peroxidase, putative | |
fgenesh4_kg.C_LG_VI000029 | AT3G02560 | Q9M885 | 29.2.1.2.1.7 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7 | 1.189608696 | 0.000856366 | 40S ribosomal protein S7 (RPS7B) | |
estExt_Genewise1_v1.C_LG_XVIII1780 | AT4G31985 | 29.2.1.2.2.39 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39 | 1.190881615 | 0.000522276 | 60S ribosomal protein L39 (RPL39C) | ||
estExt_fgenesh4_pg.C_LG_VIII1772 | AT4G15520 | Q9SUL3 | 35.1 | not assigned.no ontology | 1.194584675 | 0.001031113 | tRNA/rRNA methyltransferase (SpoU) family protein | |
estExt_Genewise1_v1.C_LG_XII0050 | AT1G59722 | F4ID24 | 35.2 | not assigned.unknown | 1.195307811 | 0.000637625 | unknown protein | |
fgenesh4_pg.C_LG_XVI000455 | AT5G06720 | Q42578 | 26.12 | misc.peroxidases | 1.198566892 | 0.001248503 | peroxidase, putative | |
estExt_Genewise1_v1.C_LG_VII3915 | AT2G18020 | P46286 | 29.2.1.2.2.8 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L8 | 1.209119234 | 0.000891673 | EMB2296 (EMBRYO DEFECTIVE 2296); structural constituent of ribosome | |
estExt_fgenesh4_pm.C_LG_X0765 | AT1G07070 | Q9LMK0 | 29.2.1.2.2.535 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A | 1.211266252 | 0.000245999 | 60S ribosomal protein L35a (RPL35aA) | |
estExt_fgenesh4_pm.C_LG_XVI0194 | AT1G09590 | Q43291 | 29.2.1.2.2.21 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21 | 1.21234231 | 0.00093525 | 60S ribosomal protein L21 (RPL21A) | |
grail3.0053004502 | AT5G20290 | Q93VG5 | 29.2.1.2.1.8 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8 | 1.216554567 | 0.000600854 | 40S ribosomal protein S8 (RPS8A) | |
eugene3.00880022 | AT4G13940 | O23255 | 13.2.3.4 | amino acid metabolism.degradation.aspartate family.methionine | 1.216650771 | 0.002558397 | HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase | Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. |
grail3.0039014201 | AT2G46370 | Q9SKE2 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 1.221119925 | 0.004137066 | JAR1 (JASMONATE RESISTANT 1) | An auxin-induced gene encoding a cytoplasmic localized phytochrome A signaling component protein similar to the GH3 family of proteins Loss of function mutants are defective in a variety of responses to jasmonic acid. |
fgenesh4_pg.C_LG_VII001101 | AT3G53620 | Q9LFF9 | 23.4.99 | nucleotide metabolism.phosphotransfer and pyrophosphatases.misc | 1.221186393 | 0.002631527 | inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative | |
eugene3.00071182 | AT4G36220 | Q42600 | 16.2.1.8 | secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H | 1.222413821 | 0.000572301 | FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase | encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. |
gw1.III.1304.1 | AT1G72330 | Q9LDV4 | 13.1.1.3.1 | amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase | 1.223418478 | 0.001692489 | ALAAT2 (ALANINE AMINOTRANSFERASE 2); alanine transaminase | Encodes for alanine aminotransferase ALAAT2. |
estExt_fgenesh4_pg.C_6280001 | AT4G38830 | Q9T0J1 | 30.2.17 | signalling.receptor kinases.DUF 26 | 1.224491407 | 0.00155504 | protein kinase family protein | |
estExt_fgenesh4_pm.C_LG_X0137 | AT1G04480 | Q593H7 | 29.2.1.2.2.23 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23 | 1.230239513 | 0.000267589 | 60S ribosomal protein L23 (RPL23A) | |
gw1.XVI.3868.1 | AT5G58420 | Q8VYK6 | 29.2.1.2.1.4 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4 | 1.239154184 | 0.000137712 | 40S ribosomal protein S4 (RPS4D) | |
estExt_fgenesh4_pm.C_LG_XII0488 | AT3G45030 | 29.2.1.2.1.20 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20 | 1.241436739 | 0.000553874 | 40S ribosomal protein S20 (RPS20A) | ||
gw1.II.1879.1 | AT1G19600 | Q9LN35 | 3.5 | minor CHO metabolism.others | 1.242419194 | 0.001624757 | pfkB-type carbohydrate kinase family protein | |
grail3.0040004901 | AT4G30800 | O65569 | 29.2.1.2.1.11 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11 | 1.243209597 | 0.000767269 | 40S ribosomal protein S11 (RPS11B) | |
eugene3.00060040 | AT5G47770 | Q09152 | 16.1.2.9 | secondary metabolism.isoprenoids.mevalonate pathway.farnesyl pyrophosphate synthetase | 1.247988113 | 0.00346525 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase | Encodes a protein with farnesyl diphosphate synthase activity. |
estExt_fgenesh4_pg.C_LG_X1328 | AT5G49520 | Q9FGZ4 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.251422856 | 0.001791102 | WRKY48 (WRKY DNA-binding protein 48); transcription factor | member of WRKY Transcription Factor; Group II-c |
eugene3.00021666 | AT1G01100 | Q8LCW9 | 29.2.1.2.2.81 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P1 | 1.251587595 | 0.000938794 | 60S acidic ribosomal protein P1 (RPP1A) | |
estExt_Genewise1_v1.C_LG_X2396 | AT3G55120 | P41088 | 16.8.2.2 | secondary metabolism.flavonoids.chalcones.chalcone isomerase | 1.254897883 | 0.000722716 | TT5 (TRANSPARENT TESTA 5); chalcone isomerase | Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. |
estExt_fgenesh4_pg.C_LG_V1341 | AT1G04270 | Q08112 | 29.2.1.2.1.15 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15 | 1.255888609 | 0.000703504 | RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome | Encodes cytosolic ribosomal protein S15. |
estExt_fgenesh4_pm.C_LG_III0647 | AT3G08580 | P31167 | 34.8 | transport.metabolite transporters at the envelope membrane | 1.257306315 | 0.000467565 | AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding | mitochondrial ADP/ATP carrier |
gw1.VIII.1137.1 | AT3G25780 | Q9LS01 | 17.7.1.4 | hormone metabolism.jasmonate.synthesis-degradation.allene oxidase cyclase | 1.259840439 | 0.000855091 | AOC3 (ALLENE OXIDE CYCLASE 3) | Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. |
grail3.0200000501 | AT1G72370 | Q08682 | 29.2.1.2.1.31 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA | 1.262162975 | 0.000358184 | P40 (40S ribosomal protein SA); structural constituent of ribosome | acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. |
estExt_fgenesh4_pg.C_LG_II2507 | AT3G23990 | P29197 | 29.6 | protein.folding | 1.26579387 | 0.000118343 | HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding | mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria. |
estExt_fgenesh4_pg.C_280124 | AT5G02960 | P49201 | 29.2.1.2.1.23 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23 | 1.267054811 | 0.001377934 | 40S ribosomal protein S23 (RPS23B) | |
grail3.3538000101 | AT2G04540 | Q8L3X9 | 11.1.3 | lipid metabolism.FA synthesis and FA elongation.ketoacyl ACP synthase | 1.270181287 | 0.000697045 | 3-oxoacyl-(acyl-carrier-protein) synthase II, putative | |
eugene3.00012291 | AT5G64260 | Q9FE06 | 30.1 | signalling.in sugar and nutrient physiology | 1.272126751 | 0.002951559 | phosphate-responsive protein, putative | |
estExt_fgenesh4_pm.C_1480010 | AT2G44350 | P20115 | 8.1.2 | TCA / org transformation.TCA.CS | 1.27234974 | 0.001226017 | ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase | encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. |
eugene3.00002480 | AT4G13170 | Q9SVR0 | 29.2.1.2.2.513 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A | 1.277336782 | 0.001162577 | 60S ribosomal protein L13A (RPL13aC) | |
grail3.0007017402 | AT1G15250 | Q8LFH7 | 29.2.1.2.2.37 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37 | 1.28488338 | 0.000891505 | 60S ribosomal protein L37 (RPL37A) | |
grail3.0009040502 | AT1G59900 | P52901 | 8.1.1.1 | TCA / org transformation.TCA.pyruvate DH.E1 | 1.285300805 | 0.001292369 | AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit); pyruvate dehydrogenase (acetyl-transferring) | encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC) |
estExt_fgenesh4_pm.C_LG_V0078 | AT5G10170 | Q9LX12 | 3.4.3 | minor CHO metabolism.myo-inositol.InsP Synthases | 1.298593345 | 0.001331293 | inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative | |
estExt_fgenesh4_pg.C_LG_I1883 | AT4G05320 | Q8H159 | 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | 1.30217614 | 0.003162497 | UBQ10 (POLYUBIQUITIN 10); protein binding | One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. |
gw1.IV.2431.1 | AT5G08350 | Q9FTA0 | 17.1.3 | hormone metabolism.abscisic acid.induced-regulated-responsive-activated | 1.30243094 | 0.002680963 | GRAM domain-containing protein / ABA-responsive protein-related | |
estExt_Genewise1_v1.C_LG_IX3421 | AT5G20290 | Q93VG5 | 29.2.1.2.1.8 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S8 | 1.30483181 | 0.000488674 | 40S ribosomal protein S8 (RPS8A) | |
grail3.0047006401 | AT5G13420 | Q9LYR4 | 7.2.2 | OPP.non-reductive PP.transaldolase | 1.305794429 | 0.001516294 | transaldolase, putative | |
estExt_fgenesh4_pm.C_LG_II0304 | AT1G43170 | P17094 | 29.2.1.2.2.3 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L3 | 1.307400878 | 0.000315075 | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome | Encodes a cytoplasmic ribosomal protein. |
estExt_fgenesh4_pm.C_LG_I1230 | AT1G33120 | 29.2.1.2.2.9 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 | 1.31051577 | 0.000260531 | 60S ribosomal protein L9 (RPL90B) | ||
estExt_fgenesh4_pg.C_LG_XV1007 | AT3G45030 | 29.2.1.2.1.20 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20 | 1.076352452 | 0.001252855 | 40S ribosomal protein S20 (RPS20A) | ||
estExt_Genewise1_v1.C_LG_XI1809 | AT4G05320 | Q8H159 | 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | 1.08196861 | 0.004135403 | UBQ10 (POLYUBIQUITIN 10); protein binding | One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. |
grail3.1094000101 | AT3G21760 | Q9LSY8 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 1.084123182 | 0.000461778 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | |
grail3.0022037901 | AT1G07920 | Q0WL56 | 29.2.4 | protein.synthesis.elongation | 1.085783402 | 0.002433175 | elongation factor 1-alpha / EF-1-alpha | |
estExt_fgenesh4_pg.C_LG_I2387 | AT5G14040 | Q9FMU6 | 34.9 | transport.metabolite transporters at the mitochondrial membrane | 1.086953362 | 0.002015778 | mitochondrial phosphate transporter | |
grail3.0003069401 | AT1G21750 | Q9XI01 | 21.1.1 | redox.thioredoxin.PDIL | 1.087926832 | 0.002214852 | ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 |
eugene3.00021246 | AT5G26667 | O04905 | 23.4.3 | nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase | 1.088078263 | 0.001551768 | uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6) | |
estExt_fgenesh4_pm.C_LG_VIII0532 | AT2G01140 | Q9ZU52 | 1.3.6 | PS.calvin cycle.aldolase | 1.094925481 | 0.001742969 | fructose-bisphosphate aldolase, putative | |
estExt_fgenesh4_pm.C_LG_V0048 | AT4G31700 | O48549 | 29.2.1.2.1.6 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6 | 1.097123556 | 0.002812057 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome | Encodes a putative ribosomal protein S6 (rps6). |
estExt_fgenesh4_pm.C_400015 | AT4G16720 | O23515 | 29.2.1.2.2.15 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L15 | 1.100769475 | 0.001462565 | 60S ribosomal protein L15 (RPL15A) | |
estExt_Genewise1_v1.C_LG_X4452 | AT4G27090 | Q9T043 | 29.2.1.2.2.14 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L14 | 1.101706502 | 0.002068203 | 60S ribosomal protein L14 (RPL14B) | |
gw1.V.3607.1 | AT4G35630 | Q96255 | 13.1.5.1.2 | amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoserine aminotransferase | 1.102723209 | 0.000305522 | PSAT (phosphoserine aminotransferase); phosphoserine transaminase | Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway. |
estExt_fgenesh4_pm.C_1220043 | AT2G17360 | Q93VH9 | 29.2.1.2.1.4 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S4 | 1.104204723 | 0.001680145 | 40S ribosomal protein S4 (RPS4A) | |
estExt_fgenesh4_pg.C_LG_IX0938 | AT1G74050 | Q9C9C5 | 29.2.1.2.2.6 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6 | 1.105458615 | 0.000958921 | 60S ribosomal protein L6 (RPL6C) | |
estExt_Genewise1_v1.C_LG_VI2460 | AT1G15250 | Q8LFH7 | 29.2.1.2.2.37 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37 | 1.106130331 | 0.000479361 | 60S ribosomal protein L37 (RPL37A) | |
grail3.0090013401 | AT4G39200 | Q9T029 | 29.2.1.2.1.25 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25 | 1.106603433 | 0.002167119 | 40S ribosomal protein S25 (RPS25E) | |
estExt_fgenesh4_pg.C_LG_X0832 | AT2G09990 | Q9SK22 | 29.2.1.2.1.16 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16 | 1.106654344 | 0.001084941 | 40S ribosomal protein S16 (RPS16A) | |
eugene3.00061661 | AT5G18200 | Q9FK51 | 2.1.2.60 | major CHO metabolism.synthesis.starch.ADP Glucose Phosphorylase | 1.107947766 | 0.001158218 | UDP-glucose:hexose-1-phosphate uridylyltransferase | |
estExt_Genewise1_v1.C_LG_XVI2163 | AT1G70600 | P49637 | 29.2.1.2.2.527 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A | 1.10976888 | 0.00111532 | 60S ribosomal protein L27A (RPL27aC) | |
eugene3.01330055 | AT3G05590 | P42791 | 29.2.1.2.2.18 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18 | 1.111001547 | 0.000243188 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome | Encodes cytoplasmic ribosomal protein L18. |
gw1.IV.2659.1 | AT1G29280 | Q9LP56 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.116560181 | 0.00212493 | WRKY65 (WRKY DNA-binding protein 65); transcription factor | member of WRKY Transcription Factor; Group II-e |
estExt_Genewise1_v1.C_LG_XVI1732 | AT2G41840 | P49688 | 29.2.1.2.1.2 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S2 | 1.116587977 | 0.001593485 | 40S ribosomal protein S2 (RPS2C) | |
eugene3.00180798 | AT2G36460 | Q9SJQ9 | 4.1.10 | glycolysis.cytosolic branch.aldolase | 1.116983785 | 0.00306676 | fructose-bisphosphate aldolase, putative | |
gw1.X.5793.1 | AT3G04840 | Q9CAV0 | 29.2.1.2.1.53 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A | 1.117617768 | 0.000286909 | 40S ribosomal protein S3A (RPS3aA) | |
grail3.0001009902 | AT1G36240 | Q9C8F7 | 29.2.1.2.2.30 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L30 | 1.118453358 | 0.000843765 | 60S ribosomal protein L30 (RPL30A) | |
eugene3.00051184 | AT1G22780 | 29.2.1.2.1.18 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18 | 1.118762759 | 0.000986938 | PFL (POINTED FIRST LEAVES); structural constituent of ribosome | S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. | |
estExt_Genewise1_v1.C_LG_XVI2419 | AT2G36170 | B9DHA6 | 29.2.1.2.2.40 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40 | 1.120529961 | 0.001181997 | ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) | |
estExt_fgenesh4_pg.C_LG_VIII0532 | AT1G07070 | Q9LMK0 | 29.2.1.2.2.535 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A | 1.121594393 | 0.001298819 | 60S ribosomal protein L35a (RPL35aA) | |
eugene3.00140097 | AT3G43980 | Q680P8 | 29.2.1.2.1.29 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S29 | 1.125629671 | 0.001984081 | 40S ribosomal protein S29 (RPS29A) | |
eugene3.00012536 | AT3G27260 | Q9LK27 | 27.3.52 | RNA.regulation of transcription.Global transcription factor group | 1.126081211 | 0.002068701 | GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding | Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain |
grail3.0019011601 | AT2G27530 | P59230 | 29.2.1.2.2.510 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A | 1.130813429 | 0.001283667 | 60S ribosomal protein L10A (RPL10aB) | |
fgenesh4_pm.C_LG_IX000091 | AT5G22770 | Q8LPL6 | 31.4 | cell.vesicle transport | 1.133478298 | 0.00270556 | ALPHA-ADR (ALPHA-ADAPTIN); binding / structural molecule | |
eugene3.00280289 | AT3G52990 | A8MR07 | 4.1.14 | glycolysis.cytosolic branch.pyruvate kinase (PK) | 1.135433708 | 0.00101944 | pyruvate kinase, putative | |
estExt_Genewise1_v1.C_1230260 | AT3G02560 | Q9M885 | 29.2.1.2.1.7 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7 | 1.135564344 | 0.000698042 | 40S ribosomal protein S7 (RPS7B) | |
estExt_fgenesh4_pg.C_LG_III0669 | AT5G39850 | Q9FLF0 | 29.2.1.2.1.9 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9 | 1.139115252 | 0.000506861 | 40S ribosomal protein S9 (RPS9C) | |
estExt_fgenesh4_pm.C_LG_XII0164 | AT1G18080 | O24456 | 33.99 | development.unspecified | 1.147952304 | 0.001517642 | ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding | Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. |
estExt_Genewise1_v1.C_LG_III0629 | AT1G27350 | 35.2 | not assigned.unknown | 1.155042276 | 0.002015248 | |||