Species & Dataset

Experiment

  • Brassica campestris

  • Common name: Mustard, Pak choi

  • Family: Brassicaceae

  • Cultivar: Pak Choi (‘Jingguan’)

  • Tissue: Second leaves from the top

  • Ozone concentration: ​251.71 ± 8.15 ppb

  • Ozone exposure: 2 days (8 hours/day)

  • Sampling time: End of exposure period

  • Platform: Illumina Hiseq 2500

  • Year of study: 2017

  • Location: China

Title: Transcriptomic analysis of Pak Choi under acute ozone exposure revealed regulatory mechanism against ozone stress

 

Summary: Ground-level ozone (O3) is one of the major air pollutants, which cause oxidative injury to plants. The physiological and biochemical mechanisms underlying the responses of plants to O3 stress have been well investigated. However, there are limited reports about the molecular basis of plant responses to O3. In this study, a comparative transcriptomic analysis of Pak Choi (Brassica campestris ssp. chinensis) exposed to different O3 concentrations was conducted for the first time. Seedlings of Pak Choi with five leaves were exposed to non-filtered air (NF, 31 ppb) or elevated O3 (E-O3, 252 ppb) for 2 days (8 h per day, from 9:00–17:00). Compared with plants in the NF, a total of 675 differentially expressed genes (DEGs) were identified in plants under E-O3, including 219 DEGs with decreasedexpressions and 456 DEGs with increased expressions. Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses revealed that O3 stress invoked multiple cellular defense pathways to mitigate the impaired cellular integrity and metabolism, including ‘glutathione metabolism’, ‘phenylpropanoid biosynthesis’, ‘sulfur metabolism’, ‘glucosinolate biosynthesis’, ‘cutin, suberine and wax biosynthesis’ and others. Transcription factors potentially involved in this cellular regulation were also found, such as AP2-ERF, WRKY, JAZ, MYB etc. Based on the RNA-Seq data and previous studies, a working model was proposed integrating O3 caused reactive oxygen burst, oxidation-reduction regulation, jasmonic acid and downstream functional genes for the regulation of cellular homeostasis after acute O3 stress. The present results provide a valuable insight into the molecular responses of Pak Choi to acute O3 stress and the specific DEGs revealed in this study could be used for further functional identification of key allelic genes determining the O3 sensitivity of Pak Choi.

 

Data repository: NCBI Sequence Read Archive (SRA) repository (Accession number SRP100739)

Reference: Zhang, L., Xu, B., Wu, T., Wen, M.X., Fan, L.X., Feng, Z.Z. and Paoletti, E., 2017. Transcriptomic analysis of Pak Choi under acute ozone exposure revealed regulatory mechanism against ozone stress. BMC plant biology, 17(1), pp.1-15.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
p-value
FDR adjusted p-value
Functional annotation
Bra001282
AT3G08040
Q9SFB0
24.2.4.1.1
.Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX)
6.5082
0.00077265
0.44366
sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1//0
Bra038089
AT4G15160
35.1
not assigned.annotated
6.7475
0.029491
1
-//-
Bra000289
AT2G43120
35.1
not assigned.annotated
7.053
0.02258
1
-//-
Bra020713
AT5G48180
35.1
not assigned.annotated
7.5222
0.041704
1
-//-
Novel01263
#N/A
#N/A
7.5698
0.010222
1
PREDICTED: uncharacterized protein LOC103849967 isoform X2 [Brassica rapa]
Bra000309
AT2G43520
35.1
not assigned.annotated
Inf
0.024836
1
-//-
Bra000813
AT4G05070
35.2
not assigned.not annotated
Inf
0.025474
1
-//-
Bra002511
AT5G60110
Q9LVG3
35.1
not assigned.annotated
Inf
0.00084877
0.463
sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1//8.15534e-139
Bra003517
AT3G62960
18.8.2
.Protein modification.S-glutathionylation.glutaredoxin
Inf
0.042549
1
-//-
Bra009445
AT5G04530
5.1.6.1.1
.Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.3-ketoacyl-CoA synthase (KCS)
Inf
0.018428
1
-//-
Bra013923
50.2.4
.Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase
Inf
0.040297
1
-//-
Bra016501
AT1G19610
26.8.3.2.1
.External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF1)
Inf
0.048531
1
-//-
Bra017995
AT1G30800
Q5Q0H2
35.2
not assigned.not annotated
Inf
0.0023354
0.78448
sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana GN=FLA19 PE=2 SV=2//2.05345e-06
Bra018944
AT3G16410
9.5.2.2
.Secondary metabolism.glucosinolates.glucosinolate degradation.nitrilespecifier protein
Inf
0.0070941
1
-//-
Bra020878
AT4G20970
15.5.32
.RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
Inf
0.020937
1
-//-
Bra027316
AT3G14740
35.1
not assigned.annotated
Inf
0.016217
1
-//-
Bra028899
AT5G01380
15.5.20
.RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix)
Inf
0.014343
1
-//-
Bra033805
AT5G40010
35.1
not assigned.annotated
Inf
0.02699
1
-//-
Bra035029
AT1G78340
18.8.1.4
.Protein modification.S-glutathionylation.glutathione S-transferase activities.class tau glutathione S-transferase
Inf
0.041356
1
-//-
Novel01134
#N/A
#N/A
Inf
0.0010695
0.51479
PREDICTED: uncharacterized protein LOC103843858 [Brassica rapa]
Bra021923
AT2G34600
15.5.45
.RNA biosynthesis.transcriptional regulation.transcription factor (TIFY)
#NAME?
0.022876
1
-//-
Bra025833
AT1G20630
10.2.1
.Redox homeostasis.enzymatic reactive oxygen species scavengers.catalase
#NAME?
0.02162
1
-//-
Bra027529
AT1G51540
19.3.3.4
.Protein homeostasis.autophagy.ATG8/ATG12 conjugation system.ATG8-conjugation E2 protein (ATG3)
#NAME?
0.044303
1
-//-
Novel00975
#N/A
#N/A
#NAME?
0.0029021
0.88649
PREDICTED: U-box domain-containing protein 52-like [Brassica rapa]
Bra005688
AT5G01380
Q9SDW0
15.5.20
.RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix)
3.9547
0.0000798
0.10499
sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1//4.82249e-125
Bra002400
AT5G22250
16.8.2.1.2.2
.RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1
3.9702
0.01972
1
-//-
Bra018969
Q9SE50
50.3.2
.Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase
3.9712
9.1e-10
0.0000149
sp|Q9SE50|BGL18_ARATH Beta-D-glucopyranosyl abscisate beta-glucosidase OS=Arabidopsis thaliana GN=BGLU18 PE=1 SV=2//0
Bra029307
AT5G61820
35.2
not assigned.not annotated
3.982
0.03564
1
-//-
Bra035973
AT1G05440
35.2
not assigned.not annotated
3.9977
0.047185
1
-//-
Bra006964
50.1.1
.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor
4.0023
0.0043738
1
-//-
Bra005939
50.1.8
.Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor
4.0357
0.03096
1
-//-
Bra023689
AT5G18620
12.4.1.1.4
.Chromatin organisation.chromatin remodeling complexes.ATPase modules.Snf2-like group.chromatin remodeling factor (Iswi)
4.0796
0.016404
1
-//-
Bra023394
AT5G13170
Q9FY94
24.2.6.1
.Solute transport.carrier-mediated transport.TOC superfamily.sugar efflux transporter (SWEET)
4.1139
0.014122
1
sp|Q9FY94|SWT15_ARATH Bidirectional sugar transporter SWEET15 OS=Arabidopsis thaliana GN=SWEET15 PE=2 SV=1//1.90673e-159
Bra019777
AT1G12610
15.5.7.2
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
4.1268
0.019374
1
-//-
Bra039984
AT2G29480
Q9ZW29
18.8.1.4
.Protein modification.S-glutathionylation.glutathione S-transferase activities.class tau glutathione S-transferase
4.166
0.0039897
0.98925
sp|Q9ZW29|GSTU2_ARATH Glutathione S-transferase U2 OS=Arabidopsis thaliana GN=GSTU2 PE=2 SV=1//9.34868e-142
Novel01116
#N/A
#N/A
4.2131
0.00025504
0.19908
BnaC04g24690D [Brassica napus]
Bra028581
AT5G10520
27.4.7
.Multi-process regulation.Rop-GTPase regulatory system.GTPase interactive protein kinase (RBK/RRK)
4.2186
0.036509
1
-//-
Bra000512
35.2
not assigned.not annotated
4.2352
0.00043825
0.29883
-//-
Bra002937
AT5G55050
Q9FIA1
35.1
not assigned.annotated
4.2561
0.0069315
1
sp|Q9FIA1|GDL87_ARATH GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1//0
Bra025193
50.1.13
.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
4.3023
0.0057406
1
-//-
Bra025995
AT1G17170
18.8.1.4
.Protein modification.S-glutathionylation.glutathione S-transferase activities.class tau glutathione S-transferase
4.329
0.00013744
0.13601
-//-
Bra026681
AT1G17180
18.8.1.4
.Protein modification.S-glutathionylation.glutathione S-transferase activities.class tau glutathione S-transferase
4.3304
0.014013
1
-//-
Bra028945
AT5G60740
24.1.3.2.2
.Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter
4.3778
0.032818
1
-//-
Bra005298
AT2G36100
35.1
not assigned.annotated
4.3935
0.0024618
0.79778
-//-
Bra027987
AT5G03610
35.1
not assigned.annotated
4.418
0.0032489
0.89374
-//-
Bra036138
AT5G49520
Q9FGZ4
15.5.22
.RNA biosynthesis.transcriptional regulation.transcription factor (WRKY)
4.4573
1.77e-9
0.0000193
sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1//4.92091e-129
Bra034061
AT3G09270
Q9SR36
18.8.1.4
.Protein modification.S-glutathionylation.glutathione S-transferase activities.class tau glutathione S-transferase
4.5045
0.0019253
0.7239
sp|Q9SR36|GSTU8_ARATH Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1//2.25462e-132
Bra012706
AT4G23210
18.4.1.17
.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (DUF26)
4.5455
0.030452
1
-//-
Bra000017
AT2G37750
35.2
not assigned.not annotated
4.6083
0.022579
1
-//-
Bra018859
AT1G50590
Q9LPS9
35.1
not assigned.annotated
4.6385
7.65e-9
0.0000626
sp|Q9LPS9|PRNL1_ARATH Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1//0
Bra029798
AT3G09870
35.2
not assigned.not annotated
4.6781
0.019938
1
-//-
Bra030903
AT1G54120
35.2
not assigned.not annotated
4.7344
0.036299
1
-//-
Bra011974
AT2G28140
35.2
not assigned.not annotated
4.7817
0.0000274
0.048279
-//-
Bra040926
AT4G18170
Q8VWJ2
15.5.22
.RNA biosynthesis.transcriptional regulation.transcription factor (WRKY)
4.7836
0.00015791
0.13601
sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1//1.09585e-140
Bra036151
AT5G49130
24.2.4.1.1
.Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX)
4.8354
0.021864
1
-//-
Bra022030
AT5G46295
35.2
not assigned.not annotated
4.8451
0.0071544
1
-//-
Bra010673
AT4G39610
O22227
35.1
not assigned.annotated
4.9122
0.0054836
1
sp|O22227|MIZ1_ARATH Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1//9.97023e-39
Bra007691
35.2
not assigned.not annotated
4.9581
0.021694
1
-//-
Novel00652
#N/A
#N/A
5.007
0.00047641
0.31186
BnaA06g16030D [Brassica napus]
Bra033811
35.2
not assigned.not annotated
5.08
0.00025295
0.19908
-//-
Bra039047
Q9LHA1
50.1.13
.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
5.2091
0.0000109
0.025587
sp|Q9LHA1|C8D11_ARATH Cytochrome P450 81D11 OS=Arabidopsis thaliana GN=CYP81D11 PE=2 SV=1//0
Bra004746
AT2G43120
Q9ZW82
35.1
not assigned.annotated
5.215
0.0000883
0.10709
sp|Q9ZW82|PRNL2_ARATH Pirin-like protein At2g43120 OS=Arabidopsis thaliana GN=At2g43120 PE=2 SV=3//0
Bra010396
AT4G27657
35.2
not assigned.not annotated
5.3089
0.0032716
0.89374
-//-
Bra041046
AT4G37390
11.2.3.1
.Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid-amido synthetase
5.3692
0.003465
0.91459
-//-
Bra028290
AT5G51990
15.5.7.2
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
5.4137
0.0032598
0.89374
-//-
Bra009313
AT5G08000
Q9SD84
35.1
not assigned.annotated
5.5023
6.01e-7
0.0030377
sp|Q9SD84|PDCB2_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana GN=PDCB2 PE=1 SV=1//1.83811e-65
Bra004768
AT2G43510
35.1
not assigned.annotated
5.5692
0.0072626
1
-//-
Bra008774
AT5G14180
5.7.1.2.2
.Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.lipase (LIP)
5.6414
0.0090595
1
-//-
Bra013367
50.2.4
.Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase
5.6587
0.022462
1
-//-
Bra005245
50.2.4
.Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase
5.6971
0.02777
1
-//-
Bra031485
F4HPY8
50.1.1
.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor
5.7413
0.0000582
0.09518
sp|F4HPY8|ALKR6_ARATH Probable aldo-keto reductase 6 OS=Arabidopsis thaliana GN=At1g60750 PE=3 SV=1//0
Bra005231
AT2G36950
Q9SZN7
35.1
not assigned.annotated
5.8962
0.00079065
0.44617
sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1//2.62255e-06
Novel01294
#N/A
#N/A
6.1354
0.018327
1
-//-
Bra029456
AT4G12480
Q39176
35.1
not assigned.annotated
6.5013
0.0001475
0.13601
sp|Q39176|ERLI1_ARATH Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana GN=EARLI1 PE=1 SV=1//2.0199e-42
Bra009237
AT5G06860
26.8.3.4
.External stimuli response.pathogen.defense mechanisms.pathogen polygalacturonase inhibitor (PGIP)
3.0489
0.01601
1
-//-
Bra033077
AT5G39670
35.1
not assigned.annotated
3.0821
0.040949
1
-//-
Bra036306
AT4G01220
21.3.3.1.1
.Cell wall organisation.pectin.rhamnogalacturonan II.biosynthesis.1,3-alpha-D-xylosyltransferase
3.0907
0.023875
1
-//-
Bra035002
AT3G44260
16.8.2.1.2.2
.RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1
3.093
0.036625
1
-//-
Bra039556
50.2.3
.Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase
3.137
0.019321
1
-//-
Bra039531
AT3G47090
C0LGP4
18.4.1.12
.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-XII)
3.1432
0.01538
1
sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1//1.60956e-173
Bra025942
AT1G17860
P13087
35.1
not assigned.annotated
3.1879
0.0017383
0.68547
sp|P13087|MIRA_SYNDU Miraculin OS=Synsepalum dulcificum PE=1 SV=3//6.23357e-51
Bra000364
AT2G44790
35.1
not assigned.annotated
3.1998
0.040334
1
-//-
Bra011686
AT4G36500
35.2
not assigned.not annotated
3.2134
0.041041
1
-//-
Bra033482
AT4G14450
35.1
not assigned.annotated
3.2228
0.045008
1
-//-
Bra025403
Q9LRQ8
50.2.3
.Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase
3.2279
0.0000804
0.10499
sp|Q9LRQ8|PMAT2_ARATH Phenolic glucoside malonyltransferase 2 OS=Arabidopsis thaliana GN=PMAT2 PE=1 SV=1//0
Bra017215
AT2G36950
35.1
not assigned.annotated
3.2542
0.00026155
0.19908
-//-
Bra029496
AT4G04490
18.4.1.24.1
.Protein modification.phosphorylation.TKL protein kinase superfamily.G-Lectin protein kinase families.protein kinase (SD-1)
3.2777
0.008369
1
-//-
Bra026963
AT1G12610
15.5.7.2
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
3.2835
0.039776
1
-//-
Bra011942
AT2G28500
15.5.24
.RNA biosynthesis.transcriptional regulation.transcription factor (AS2/LOB)
3.3026
0.020113
1
-//-
Bra015986
AT1G73540
Q8VY81
35.1
not assigned.annotated
3.3277
0.009433
1
sp|Q8VY81|NUD21_ARATH Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1//3.00573e-87
Bra021622
O22920
24.2.8.2.1
.Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:monovalent cation antiporter (CHX)
3.34
0.0018696
0.71152
sp|O22920|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1//0
Bra025274
AT3G27400
21.3.5.2
.Cell wall organisation.pectin.modification and degradation.pectate lyase
3.3588
0.020565
1
-//-
Bra012938
AT5G61600
Q9FKG1
15.5.7.1
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)
3.3698
0.014292
1
sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1//4.30453e-98
Bra018121
AT4G10270
35.2
not assigned.not annotated
3.3808
0.024369
1
-//-
Bra022437
AT3G19595
Q00IB6
18.4.25.1.6
.Protein modification.phosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.subcluster H/CPL3-4 phosphatase
3.3958
0.014752
1
sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1//7.57761e-42
Bra009365
AT5G08730
35.1
not assigned.annotated
3.3975
0.01477
1
-//-
Bra010802
AT1G30040
11.6.3.4
.Phytohormone action.gibberellin.modification and degradation.gibberellin 2-oxidase
3.4007
0.00086405
0.46361
-//-
Bra008850
AT5G13170
24.2.6.1
.Solute transport.carrier-mediated transport.TOC superfamily.sugar efflux transporter (SWEET)
3.4521
0.00011563
0.13043
-//-
Bra031727
AT1G11130
35.1
not assigned.annotated
3.46
0.00011741
0.13043
-//-
Bra027547
50.1.1
.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor
3.4742
0.0062913
1
-//-
Bra004708
AT2G42570
35.1
not assigned.annotated
3.4889
0.018826
1
-//-
Bra034206
AT4G03415
18.4.24.2.5
.Protein modification.phosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade E phosphatase
3.5366
0.0013619
0.58653
-//-
Bra031069
AT1G19220
15.5.7.2
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
3.5983
0.03248
1
-//-
Bra016103
AT1G71880
Q39232
24.2.2.4
.Solute transport.carrier-mediated transport.MFS superfamily.sugar transporter (SUT/SUC)
3.6234
0.00034369
0.24046
sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1//0
Bra014547
AT3G59220
35.1
not assigned.annotated
3.6253
0.048935
1
-//-
Novel00281
#N/A
#N/A
3.6393
0.014608
1
-//-
Bra015727
AT1G76650
Q9SRE6
35.1
not assigned.annotated
3.6708
0.012448
1
sp|Q9SRE6|CML38_ARATH Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1//5.05466e-99
Bra034424
AT1G35210
35.2
not assigned.not annotated
3.6806
0.023453
1
-//-
Bra000815
AT1G66100
35.1
not assigned.annotated
3.7018
0.044153
1
-//-
Bra009105
AT5G05340
35.1
not assigned.annotated
3.7182
0.036072
1
-//-
Bra013815
AT4G24570
24.2.13
.Solute transport.carrier-mediated transport.solute transporter (MTCC)
3.7299
0.013044
1
-//-
Bra008676
AT5G15780
35.2
not assigned.not annotated
3.738
0.0005695
0.35846
-//-
Bra029660
AT3G07570
35.1
not assigned.annotated
3.7418
0.031303
1
-//-
Bra037007
AT4G33420
35.1
not assigned.annotated
3.7488
0.01194
1
-//-
Bra022882
AT2G32280
35.2
not assigned.not annotated
3.7561
0.0034554
0.91459
-//-
Bra034350
35.2
not assigned.not annotated
3.7621
0.0045295
1
-//-
Bra025998
AT1G17147
Q1G3U8
35.1
not assigned.annotated
3.7802
0.0000228
0.046711
sp|Q1G3U8|VQ1_ARATH VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1//8.07975e-43
Bra038677
AT3G11740
35.1
not assigned.annotated
3.7944
0.0021981
0.78408
-//-
Bra025325
AT3G28340
21.2.2.1.1
.Cell wall organisation.hemicellulose.xylan.biosynthesis.galacturonosyltransferase
3.8023
0.020084
1
-//-
Bra009775
AT5G24600
35.2
not assigned.not annotated
3.821
0.0039462
0.98595
-//-
Bra038031
AT1G55920
4.1.4.2.1
.Amino acid metabolism.biosynthesis.serine family.cysteine.serine O-acetyltransferase (SAT)
3.8324
0.001802
0.69386
-//-
Bra035732
AT5G51190
15.5.7.1
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)
3.8447
0.040549
1
-//-
Bra026684
AT1G17180
18.8.1.4
.Protein modification.S-glutathionylation.glutathione S-transferase activities.class tau glutathione S-transferase
3.8735
0.014695
1
-//-
Bra027782
AT1G63840
Q9SUS5
35.1
not assigned.annotated
3.8983
0.0000619
0.096436
sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1//2.35232e-32
Bra017839
AT4G37610
15.5.31
.RNA biosynthesis.transcriptional regulation.transcription factor (TAZ)
2.3769
0.029011
1
-//-
Novel00198
#N/A
#N/A
2.3796
0.031331
1
PREDICTED: LOW QUALITY PROTEIN: zinc finger protein ZAT12 [Brassica rapa]
Bra000513
35.2
not assigned.not annotated
2.3906
0.0054557
1
-//-
Bra034100
AT2G01520
35.1
not assigned.annotated
2.3972
0.02569
1
-//-
Bra015434
AT1G05540
35.2
not assigned.not annotated
2.4114
0.043607
1
-//-
Bra019477
AT3G46090
15.5.15
.RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)
2.4142
0.010755
1
-//-
Bra010645
AT4G39940
O49196
25.2.1.2
.Nutrient uptake.sulfur assimilation.sulfate assimilation.APS kinase
2.461
0.032195
1
sp|O49196|APK2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=APK2 PE=1 SV=1//1.44151e-169
Bra027134
50.1.1
.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor
2.4943
0.032591
1
-//-
Bra006397
AT5G17330
4.1.1.1.3.1
.Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase
2.5109
0.026794
1
-//-
Bra025884
AT1G21250
Q39191
18.4.1.25
.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (WAK/WAKL)
2.5149
0.032685
1
sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2//0
Bra011969
50.4.2
.Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen lyase
2.5489
0.0073847
1
-//-
Bra005935
AT5G07440
25.1.6.1
.Nutrient uptake.nitrogen assimilation.glutamate deamination.glutamate dehydrogenase
2.5573
0.047059
1
-//-
Bra020862
AT4G21910
Q9LYT3
24.2.4.1.1
.Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX)
2.5663
1.46e-8
0.0000958
sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1//1.64677e-132
Bra032670
AT1G02205
F4HVY0
21.9.1.7.1.1
.Cell wall organisation.cutin and suberin.cuticular lipid formation.alkane-forming pathway.CER1-CER3 alkane-forming complex.aldehyde decarbonylase component CER1
2.5691
0.0003453
0.24046
sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1//0
Bra017272
AT2G35980
35.1
not assigned.annotated
2.5974
0.01901
1
-//-
Bra007039
AT3G54000
35.2
not assigned.not annotated
2.6029
0.042593
1
-//-
Bra011237
AT4G30980
15.5.32
.RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
2.6141
0.042472
1
-//-
Bra031603
AT5G60400
35.2
not assigned.not annotated
2.6173
0.0030426
0.88914
-//-
Bra024038
AT4G30850
35.1
not assigned.annotated
2.6262
0.003705
0.95483
-//-
Bra023294
AT1G32920
35.2
not assigned.not annotated
2.6519
0.029388
1
-//-
Bra002984
AT4G27280
35.1
not assigned.annotated
2.6575
0.014161
1
-//-
Bra033532
35.2
not assigned.not annotated
2.662
0.024849
1
-//-
Bra016166
AT1G71015
35.1
not assigned.annotated
2.7176
0.01925
1
-//-
Bra012184
AT1G19640
11.7.3.1
.Phytohormone action.jasmonic acid.conjugation and degradation.SAM-dependent carboxyl methyltransferase
2.7193
0.00093934
0.48038
-//-
Bra004294
Q9C9G4
50.3.1
.Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond
2.7436
0.00000133
0.0054557
sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1//2.35753e-180
Bra003840
AT1G73600
Q9C6B9
5.2.4.1
.Lipid metabolism.glycerolipid biosynthesis.phosphatidylcholine.phospho-base N-methyltransferase
2.7459
0.009956
1
sp|Q9C6B9|PEAM3_ARATH Phosphoethanolamine N-methyltransferase 3 OS=Arabidopsis thaliana GN=NMT3 PE=2 SV=2//0
Bra035945
AT5G61000
13.2.3.5.1
.Cell cycle organisation.DNA replication.elongation.single-stranded-DNA binding RPA complex.component RPA1
2.7534
0.048783
1
-//-
Bra000001
AT2G37440
Q0WT19
27.5.4.1
.Multi-process regulation.phosphoinositide lipid regulatory system.inositol polyphosphate 5-phosphatase activities.type-I inositol-polyphosphate 5-phosphatase
2.764
0.010501
1
sp|Q0WT19|IP5P8_ARATH Type I inositol polyphosphate 5-phosphatase 8 OS=Arabidopsis thaliana GN=IP5P8 PE=2 SV=1//0
Bra009096
AT5G05220
35.2
not assigned.not annotated
2.7799
0.0019897
0.7239
-//-
Bra040158
AT4G17490
15.5.7.1
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)
2.8051
0.046743
1
-//-
Bra024953
AT5G47230
O80341
15.5.7.1
.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)
2.8108
0.00000364
0.010623
sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1//5.0064e-94
Bra012889
AT3G50770
35.1
not assigned.annotated
2.811
0.031455
1
-//-
Bra025351
Q9LHA1
50.1.13
.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
2.838
7.12e-10
0.0000149
sp|Q9LHA1|C8D11_ARATH Cytochrome P450 81D11 OS=Arabidopsis thaliana GN=CYP81D11 PE=2 SV=1//0
Bra005891
AT5G06320
Q9SJ52
35.1
not assigned.annotated
2.8414
0.014892
1
sp|Q9SJ52|YLS9_ARATH Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1//3.09147e-48
Bra009730
AT5G24080
18.4.1.24.2
.Protein modification.phosphorylation.TKL protein kinase superfamily.G-Lectin protein kinase families.protein kinase (SD-2)
2.8532
0.022599
1
-//-
Bra026621
AT2G02010
Q9ZPS3
4.1.1.1.3.1
.Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase
2.8702
0.001285
0.57612
sp|Q9ZPS3|DCE4_ARATH Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=1 SV=1//0
Bra021965
50.1.13
.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
2.9188
0.046046
1
-//-
Bra034557
35.2
not assigned.not annotated
2.9198
0.038462
1
-//-
Bra000651
AT4G08555
35.2
not assigned.not annotated
2.9224
0.00026005
0.19908
-//-
Bra041035
AT3G22160
35.1
not assigned.annotated
2.93
0.0035443
0.92804
-//-
Bra029172
AT5G59320
35.1
not assigned.annotated
2.9309
0.049885
1
-//-
Bra005127
AT2G38250
O80450
15.5.20
.RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix)
2.9354
0.0000152
0.033089
sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1//1.69522e-88
Bra013985
AT5G17350
35.2
not assigned.not annotated
2.937
0.018477
1
-//-
Bra027210
50.3.2
.Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase
2.9506
0.00044797
0.29923
-//-
Bra030386
Q9SE50
50.3.2
.Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase
2.9583
0.0011706
0.55404
sp|Q9SE50|BGL18_ARATH Beta-D-glucopyranosyl abscisate beta-glucosidase OS=Arabidopsis thaliana GN=BGLU18 PE=1 SV=2//0
Novel00394
#N/A
#N/A
2.9789
0.0042837
1
PREDICTED: probable sulfate transporter 4.2 [Brassica rapa]
Bra001752
AT3G19580
15.5.15
.RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)
3.007
0.019493
1
-//-
Bra031757
AT1G11130
13.4.4.2.2
.Cell cycle organisation.cytokinesis.phragmoplast disassembly.Katanin ATP-dependent microtubule severing complex.regulatory component
3.0079
0.0014521
0.60204
-//-
Bra014929
AT3G23250
Q7XBH4
15.5.2.1
.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)
3.0195
0.007396
1
sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2//3.40504e-72
Bra024215
AT4G28250
21.4.2.3
.Cell wall organisation.cell wall proteins.expansin activities.beta-class expansin
3.0462
0.0060679
1
-//-
Bra000018
50.1.1
.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor
1.97
0.03032
1
-//-
Bra005457
AT2G34070
O22960
35.1
not assigned.annotated
1.9756
0.0068977
1
sp|O22960|TBL37_ARATH Protein trichome birefringence-like 37 OS=Arabidopsis thaliana GN=TBL37 PE=2 SV=2//0
Bra016733
AT1G13340
35.2
not assigned.not annotated
1.9864
0.013101
1
-//-
Bra019277
AT4G23690
Q9SUQ8
35.1
not assigned.annotated
1.9891
0.011096
1
sp|Q9SUQ8|DIR6_ARATH Dirigent protein 6 OS=Arabidopsis thaliana GN=DIR6 PE=1 SV=1//3.14571e-116
Bra036881
AT4G25000
3.2.3.3.1.1
.Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase
1.9968
0.027727
1
-//-
Bra004913
AT2G45450
F4IG60
35.2
not assigned.not annotated
1.9982
0.011519
1
sp|F4IG60|ZPR1_ARATH Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1//4.8787e-17
Bra022364
AT5G48485
35.2
not assigned.not annotated
1.9998
0.015348
1
-//-
Bra038267
AT1G07790
12.1.3
.Chromatin organisation.histones.histone (H2B)
2.004
0.01617
1
-//-
Bra006086
AT5G11070
35.2
not assigned.not annotated
2.0051
0.00028695
0.21345
-//-
Bra004857
AT2G44690
27.4.1
.Multi-process regulation.Rop-GTPase regulatory system.small GTPase (ROP)
2.0071
0.044057
1
-//-
Bra015120
AT3G25250
Q9LSF1
18.4.6.5
.Protein modification.phosphorylation.AGC protein kinase superfamily.protein kinase (AGC-VIII)
2.0079
0.00014772
0.13601
sp|Q9LSF1|OXI1_ARATH Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=1 SV=1//0
Bra023576
AT5G16600
35.2
not assigned.not annotated
2.0151
0.013107
1
-//-
Bra015834
AT1G75550
35.2
not assigned.not annotated
2.0168
0.047298
1
-//-
Bra031433
AT1G61490
18.4.1.24.1
.Protein modification.phosphorylation.TKL protein kinase superfamily.G-Lectin protein kinase families.protein kinase (SD-1)
2.0175
0.040952
1
-//-
Bra009620
AT5G02020
35.2
not assigned.not annotated
2.024
0.047511
1
-//-
Bra040577
AT4G16400
35.2
not assigned.not annotated
2.0264
0.0094337
1
-//-
Bra018925
AT1G34300
18.4.1.24.2
.Protein modification.phosphorylation.TKL protein kinase superfamily.G-Lectin protein kinase families.protein kinase (SD-2)
2.0459
0.0084628
1
-//-
Bra017040
AT2G40000
35.1
not assigned.annotated
2.0482
0.027775
1
-//-
Bra026124
AT1G15520
Q9M9E1
24.1.3.2.2
.Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter
2.0571
0.0010655
0.51479
sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1//0
Bra033117
AT4G12110
5.5.2.1
.Lipid metabolism.phytosterol biosynthesis.phytosterol conjugation.methylsterol monooxygenase
2.0785
0.04317
1
-//-
Bra021668
Q9SKK4
50.1.13
.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
2.0876
0.036269
1
sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1//6.70675e-76
Bra015981
AT1G58270
Q8T126
35.2
not assigned.not annotated
2.101
6.5e-7
0.0030377
sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1//5.68165e-13
Bra004370
AT1G69310
15.5.22
.RNA biosynthesis.transcriptional regulation.transcription factor (WRKY)
2.14
0.020312
1
-//-
Bra037422
AT5G49280
35.2
not assigned.not annotated
2.1404
0.00000389
0.010623
-//-
Bra018710
AT1G65500
35.2
not assigned.not annotated
2.1419
0.00000245
0.0080326
-//-
Bra014177
AT1G49230
35.1
not assigned.annotated
2.1456
0.037212
1
-//-