Species & Dataset
Experiment
Foliar ozone injury
  • Quercus rubra

  • Common name: Northern red oak

  • Family: Fagaceae

  • Cultivar: Quercus rubra L.

  • Tissue: Shoot leaves

  • Ozone concentration: < 10 ppb (control), 150 ppb, 225 ppb, and 300 ppb

  • Ozone exposure: 28 days (8 hrs/day)

  • Sampling time: 3 time points (7 h, 14 days, 28 days) after stress initiation

  • Platform: HiSeq 2500 (Illumina)

  • Year of study: 2020

  • Location: USA

Injury pic.jpg

Title: Transcriptome profiles of Quercus rubra responding to increased O3 stress

Summary: Climate plays an essential role in forest health, and climate change may increase forest productivity losses due to abiotic and biotic stress. Increased temperature leads to the increased formation of ozone (O3). Ozone is formed by the interaction of sunlight, molecular oxygen and by the reactions of chemicals commonly found in industrial and automobile emissions such as nitrogen oxides and volatile organic compounds. Although it is well known that productivity of Northern red oak (Quercus rubra) (NRO), an ecologically and economically important species in the forests of eastern North America, is reduced by exposure to O3, limited information is available on its responses to exogenous stimuli at the level of gene expression. RNA sequencing yielded more than 323 million high-quality raw sequence reads. De novo assembly generated 52,662 unigenes, of which more than 42,000 sequences could be annotated through homology-based searches. A total of 4140 differential expressed genes (DEGs) were detected in response to O3 stress, as compared to their respective controls. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses of the O3-response DEGs revealed perturbation of several biological pathways including energy, lipid, amino acid, carbohydrate and terpenoid metabolism as well as plant-pathogen interaction.This study provides the first reference transcriptome for NRO and initial insights into the genomic responses of NRO to O3. Gene expression profiling reveals altered primary and secondary metabolism of NRO seedlings, including known defense responses such as terpenoid biosynthesis.

 

Data repository: SRA (Bioproject accession PRJNA273270)

Reference: Lane, T., Best, T., Zembower, N., Davitt, J., Henry, N., Xu, Y., Koch, J., Liang, H., McGraw, J., Schuster, S. and Shim, D., 2016. The green ash transcriptome and identification of genes responding to abiotic and biotic stresses. BMC genomics, 17(1), pp.1-16.

Gene identifier
Bin Code
Bin Name
log FoldChange
FDR adjusted p-value
Functional annotation
Quercus_rubra_120313_comp6367_c0_seq1
#N/A
1.902167288
0.049200125
"---NA---";
Quercus_rubra_120313_comp28709_c0_seq1
16.1.2.3
secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase
-1.992672773
0.049457342
"3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like";Ontology_id "GO:0005789,GO:0050661,GO:0016021,GO:0015936,GO:0055114,GO:0004420,GO:0016126,GO:0016104";Enzyme_code "EC:1.1.1.34";Enzyme_name "Hydroxymethylglutaryl-CoA reductase (NADPH)";
Quercus_rubra_120313_comp30430_c0_seq1
19.30
tetrapyrrole synthesis.urogen III methylase
2.602495872
0.0000308
"uroporphyrinogen-III C-methyltransferase";Ontology_id "GO:0009507,GO:0019354,GO:0055114,GO:0004851,GO:0032259";Enzyme_code "EC:2.1.1.107";Enzyme_name "Uroporphyrinogen-III C-methyltransferase";
Quercus_rubra_120313_comp29209_c0_seq1
13.1.5.1.1
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase
1.76897307
0.0000661
"formate mitochondrial";Ontology_id "GO:0042183,GO:0051287,GO:0004617,GO:0005739,GO:0008863,GO:0055114,GO:0009070";Enzyme_code "EC:1.1.1.95,EC:1.2.1.2";Enzyme_name "Phosphoglycerate dehydrogenase,Acting on the aldehyde or oxo group of donors";
Quercus_rubra_120313_comp16755_c0_seq1
27.3.66
RNA.regulation of transcription.Psudo ARR transcription factor family
1.465973128
0.00073498
"two-component response regulator-like APRR1";Ontology_id "GO:0007165,GO:0005622";
Quercus_rubra_120313_comp20809_c0_seq2
#N/A
2.107743093
0.00073498
"---NA---";
Quercus_rubra_120313_comp11359_c0_seq1
#N/A
1.320164607
0.000743514
"---NA---";
Quercus_rubra_120313_comp23000_c0_seq2
#N/A
4.769926788
0.000990343
"PREDICTED: uncharacterized protein LOC108983399";
Quercus_rubra_120313_comp11041_c0_seq1
#N/A
1.152125596
0.001815995
"---NA---";
Quercus_rubra_120313_comp23226_c0_seq2
23.3.1.2
nucleotide metabolism.salvage.phosphoribosyltransferases.hgprt
1.364805561
0.001923819
"transcription elongation factor B polypeptide 1";Ontology_id "GO:0009056,GO:0005829,GO:0008135,GO:0016740,GO:0006139,GO:0005654";
Quercus_rubra_120313_comp29639_c0_seq1
#N/A
1.186642607
0.004215679
"ferredoxin--NADP root chloroplastic";Ontology_id "GO:0055114,GO:0004324";Enzyme_code "EC:1.18.1,EC:1.18.1.2";Enzyme_name "Acting on iron-sulfur proteins as donors,Ferredoxin--NADP(+) reductase";
Quercus_rubra_120313_comp23705_c0_seq1
#N/A
1.541699431
0.005436429
"---NA---";
Quercus_rubra_120313_comp20714_c0_seq1
23.3.1.2
nucleotide metabolism.salvage.phosphoribosyltransferases.hgprt
1.805945673
0.006867757
"Hypoxia-responsive family";Ontology_id "GO:0009628,GO:0016020,GO:0016740,GO:0006950";
Quercus_rubra_120313_comp31659_c0_seq3
29.5.5
protein.degradation.serine protease
1.082370681
0.013595035
"protease Do-like chloroplastic";Ontology_id "GO:0019538,GO:0006091,GO:0009056,GO:0016020,GO:0016043,GO:0015979,GO:0009536,GO:0009579,GO:0016787";Enzyme_code "EC:3.4.21";Enzyme_name "Acting on peptide bonds (peptidases)";
Quercus_rubra_120313_comp11553_c0_seq1
#N/A
1.945807731
0.014040647
"---NA---";
Quercus_rubra_120313_comp11421_c0_seq1
#N/A
1.652106983
0.01769264
"---NA---";
Quercus_rubra_120313_comp22524_c0_seq1
#N/A
1.493346607
0.01769264
"DNA polymerase epsilon catalytic subunit";
Quercus_rubra_120313_comp28157_c0_seq2
23.3
nucleotide metabolism.salvage
2.091801969
0.01769264
"ABC transporter F family member 1";Ontology_id "GO:0005524,GO:0055085,GO:0103115,GO:0015439,GO:0015886";Enzyme_code "EC:3.6.1.3,EC:3.6.3.41,EC:3.6.1.15";Enzyme_name "Adenosinetriphosphatase,Heme-transporting ATPase,Nucleoside-triphosphate phosphatase";
Quercus_rubra_120313_comp31799_c0_seq11
#N/A
3.825467547
0.01769264
"DETOXIFICATION 2-like isoform X3";
Quercus_rubra_120313_comp29133_c0_seq3
13.1.5.3.1
amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.OASTL
1.921559901
0.021538359
"bifunctional L-3-cyanoalanine synthase cysteine synthase mitochondrial";Ontology_id "GO:0009507,GO:0030170,GO:0006955,GO:0005507,GO:0005739,GO:0080147,GO:0019500,GO:0004124,GO:0050017,GO:0006535";Enzyme_code "EC:4.4.1.9,EC:2.5.1.47";Enzyme_name "L-3-cyanoalanine synthase,Cysteine synthase";
Quercus_rubra_120313_comp31190_c0_seq2
#N/A
1.417098582
0.021538359
"BnaC01g13070D";
Quercus_rubra_120313_comp30441_c0_seq2
30.11
signalling.light
2.860497396
0.025415843
"Root phototropism 2";Ontology_id "GO:0005634,GO:0005737,GO:0004871,GO:0005515,GO:0007165,GO:0009638";
Quercus_rubra_120313_comp16402_c0_seq1
#N/A
1.504314527
0.02650972
"---NA---";
Quercus_rubra_120313_comp24122_c0_seq1
34.14
transport.unspecified cations
1.06968759
0.029339513
"ADP,ATP carrier mitochondrial-like";
Quercus_rubra_120313_comp86531_c0_seq1
#N/A
2.045449688
0.029339513
"---NA---";
Quercus_rubra_120313_comp23627_c0_seq1
#N/A
1.433176034
0.031140601
"uncharacterized protein LOC18787308";Ontology_id "GO:0005739";
Quercus_rubra_120313_comp28461_c0_seq7
#N/A
2.972387936
0.031140601
"---NA---";
Quercus_rubra_120313_comp39956_c0_seq1
#N/A
1.743940039
0.034162322
"---NA---";
Quercus_rubra_120313_comp138990_c0_seq1
#N/A
2.867605257
0.037076828
"---NA---";
Quercus_rubra_120313_comp21777_c0_seq1
34.99
transport.misc
1.274578691
0.037076828
"ATP synthase subunit mitochondrial";Ontology_id "GO:0000166,GO:0016020,GO:0005739,GO:0009058,GO:0006139,GO:0006810,GO:0005215,GO:0016787";Enzyme_code "EC:3.6.1.3,EC:3.6.1.15";Enzyme_name "Adenosinetriphosphatase,Nucleoside-triphosphate phosphatase";
Quercus_rubra_120313_comp25691_c0_seq2
29.5.5
protein.degradation.serine protease
3.240451559
0.037076828
"ATP-dependent Clp protease proteolytic subunit-related chloroplastic";Ontology_id "GO:0019538,GO:0009536,GO:0006950,GO:0016787";Enzyme_code "EC:3.4.21";Enzyme_name "Acting on peptide bonds (peptidases)";
Quercus_rubra_120313_comp7930_c0_seq1
#N/A
1.708464065
0.037076828
"---NA---";
Quercus_rubra_120313_comp19244_c0_seq1
#N/A
1.211895743
0.037791845
"---NA---";
Quercus_rubra_120313_comp21116_c0_seq1
35.1.5
not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
6.032677386
0.037791845
"pentatricopeptide repeat-containing At3g46870";Ontology_id "GO:0005488,GO:0009536";
Quercus_rubra_120313_comp21393_c0_seq2
29.5.3
protein.degradation.cysteine protease
1.083213048
0.037791845
"cysteine inhibitor";Ontology_id "GO:0019538,GO:0030234,GO:0009987,GO:0016787";
Quercus_rubra_120313_comp23087_c0_seq1
28.1
DNA.synthesis/chromatin structure
1.402811967
0.037791845
"probable mediator of RNA polymerase II transcription subunit 26c";Ontology_id "GO:0005634,GO:0003677,GO:0008135,GO:0006139";
Quercus_rubra_120313_comp23087_c1_seq1
28.1
DNA.synthesis/chromatin structure
1.246210037
0.037791845
"probable mediator of RNA polymerase II transcription subunit 26c";Ontology_id "GO:0005634,GO:0003677,GO:0008135,GO:0006139";
Quercus_rubra_120313_comp26846_c0_seq1
#N/A
3.139953246
0.037791845
"pterin-4-alpha-carbinolamine dehydratase";Ontology_id "GO:0003824,GO:0009058,GO:0009536,GO:0009987";Enzyme_code "EC:4.2.1.96";Enzyme_name "4a-hydroxytetrahydrobiopterin dehydratase";
Quercus_rubra_120313_comp28185_c0_seq1
#N/A
2.66938012
0.037791845
"---NA---";
Quercus_rubra_120313_comp29073_c0_seq6
#N/A
1.969422981
0.037791845
"---NA---";
Quercus_rubra_120313_comp29848_c0_seq2
#N/A
6.221115946
0.037791845
"PREDICTED: uncharacterized protein LOC104817135";
Quercus_rubra_120313_comp31414_c0_seq4
26.9
misc.glutathione S transferases
1.058920608
0.037791845
"glutathione S-transferase zeta class-like isoform X1";Ontology_id "GO:0009072,GO:0005515,GO:0005737,GO:0004364";Enzyme_code "EC:2.5.1.18";Enzyme_name "Glutathione transferase";
Quercus_rubra_120313_comp31472_c0_seq3
23
nucleotide metabolism
1.623186928
0.037791845
"heat shock 70 kDa 17";Ontology_id "GO:0000166,GO:0003824,GO:0016020,GO:0008152,GO:0005783,GO:0005794,GO:0005773,GO:0009536";Enzyme_code "EC:1.3.1.74";Enzyme_name "2-alkenal reductase (NAD(P)(+))";
Quercus_rubra_120313_comp41631_c0_seq1
#N/A
2.0733552
0.037791845
"---NA---";
Quercus_rubra_120313_comp24445_c0_seq3
13.1.5.3.2
amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.SAT
1.372899562
0.039347533
"serine acetyltransferase chloroplastic-like";Ontology_id "GO:0009001,GO:0005737,GO:0006535";Enzyme_code "EC:2.3.1.30";Enzyme_name "Serine O-acetyltransferase";
Quercus_rubra_120313_comp30441_c0_seq3
#N/A
1.21284443
0.039347533
"root phototropism 2";Ontology_id "GO:0009606,GO:0009628,GO:0004871";
Quercus_rubra_120313_comp31362_c0_seq1
12.1.1
N-metabolism.nitrate metabolism.NR
1.560480175
0.039347533
"nitrate reductase [NAD(P)H]-like";Ontology_id "GO:0050464,GO:0050463,GO:0030151,GO:0055114,GO:0006809,GO:0009703,GO:0043546,GO:0020037,GO:0042128";Enzyme_code "EC:1.7.1.2,EC:1.7.1.1,EC:1.7.1.3,EC:1.7.99.4";Enzyme_name "Nitrate reductase (NAD(P)H),Nitrate reductase (NADH),Nitrate reductase (NADPH),Nitrate reductase";
Quercus_rubra_120313_comp15761_c0_seq1
#N/A
1.421245756
0.041137797
"---NA---";
Quercus_rubra_120313_comp23813_c0_seq3
23
nucleotide metabolism
1.206626033
0.043256407
"transcription initiation factor TFIID subunit 15b";Ontology_id "GO:0000166,GO:0003676";
Quercus_rubra_120313_comp8390_c0_seq1
#N/A
1.134943536
0.047817928
"---NA---";
Quercus_rubra_120313_comp18756_c0_seq1
29.5.11
protein.degradation.ubiquitin
1.262538334
0.048741013
"26S proteasome non-ATPase regulatory subunit 4 homolog";Ontology_id "GO:0005634,GO:0019538,GO:0005515,GO:0009056,GO:0016043,GO:0005829";
Quercus_rubra_120313_comp30796_c1_seq19
-8.041854221
0.005271856
RETICULATA-RELATED chloroplastic;Ontology_id "GO:0016020";
Quercus_rubra_120313_comp31744_c0_seq3
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
4.814625621
0.000877845
"photosystem II 44 kDa (chloroplast)";Ontology_id "GO:0009772,GO:0046872,GO:0045156,GO:0009523,GO:0016021,GO:0018298,GO:0016168,GO:0009535";
Quercus_rubra_120313_comp29848_c0_seq2
#N/A
8.237663245
0.002162619
"PREDICTED: uncharacterized protein LOC104817135";
Quercus_rubra_120313_comp31015_c0_seq15
1.1.3
PS.lightreaction.cytochrome b6/f
5.082940258
0.002162619
"cytochrome b6 (chloroplast)";Ontology_id "GO:0005506,GO:0022904,GO:0016021,GO:0015979,GO:0045158,GO:0009535,GO:0020037";
Quercus_rubra_120313_comp31744_c0_seq2
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
3.506305386
0.002162619
"photosystem II D2 (chloroplast)";Ontology_id "GO:0009772,GO:0005506,GO:0045156,GO:0009523,GO:0016021,GO:0018298,GO:0016168,GO:0009535";
Quercus_rubra_120313_comp11715_c0_seq1
#N/A
3.92573212
0.003735976
"ATP synthase subunit";Ontology_id "GO:0005739";
Quercus_rubra_120313_comp20455_c0_seq1
1.3.1
PS.calvin cyle.rubisco large subunit
4.447789274
0.003735976
"ribulose-1,5-bisphosphate carboxylase oxygenase large subunit (chloroplast)";Ontology_id "GO:0000287,GO:0009507,GO:0019253,GO:0009853,GO:0055114,GO:0004497,GO:0016984";Enzyme_code "EC:4.1.1.39";Enzyme_name "Ribulose-bisphosphate carboxylase";
Quercus_rubra_120313_comp31015_c0_seq16
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
4.53723217
0.003735976
"photosystem II 47 kDa (chloroplast)";Ontology_id "GO:0009772,GO:0045156,GO:0009523,GO:0016021,GO:0018298,GO:0016168,GO:0009535";
Quercus_rubra_120313_comp31015_c0_seq6
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
4.93870561
0.003735976
"photosystem II CP47 chlorophyll apo (plastid)";Ontology_id "GO:0009772,GO:0045156,GO:0009523,GO:0016021,GO:0018298,GO:0016168,GO:0009535";
Quercus_rubra_120313_comp31485_c0_seq1
1.1.5
PS.lightreaction.other electron carrier (ox/red)
4.329899672
0.003735976
"photosystem I P700 apo A1 (chloroplast)";Ontology_id "GO:0000287,GO:0009055,GO:0016021,GO:0009522,GO:0018298,GO:0015979,GO:0055114,GO:0051539,GO:0016168,GO:0009535";
Quercus_rubra_120313_comp32124_c0_seq1
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
5.073652011
0.003735976
"photosystem II D1 (chloroplast)";Ontology_id "GO:0010242,GO:0009772,GO:0009523,GO:0045157,GO:0009635,GO:0009535,GO:0005515,GO:0005506,GO:0045156,GO:0016021,GO:0018298,GO:0016168,GO:0010287";
Quercus_rubra_120313_comp8087_c0_seq1
#N/A
4.959537564
0.003735976
"Ycf68 (chloroplast)";Ontology_id "GO:0003824,GO:0005488,GO:0009536";
Quercus_rubra_120313_comp31485_c0_seq10
1.1.5
PS.lightreaction.other electron carrier (ox/red)
4.439696705
0.003820479
"photosystem I P700 chlorophyll a apo A2 (chloroplast)";Ontology_id "GO:0000287,GO:0009055,GO:0016021,GO:0009522,GO:0018298,GO:0015979,GO:0055114,GO:0051539,GO:0016168,GO:0009535";
Quercus_rubra_120313_comp23553_c1_seq1
#N/A
5.196823737
0.005271856
"Metallocarboxypeptidase inhibitor";Ontology_id "GO:0005739,GO:0009536";
Quercus_rubra_120313_comp31647_c0_seq5
#N/A
5.952911141
0.005271856
"---NA---";
Quercus_rubra_120313_comp11010_c0_seq1
20.1.4
stress.biotic.kinases
4.952199205
0.005698113
"Ribulose bisphosphate carboxylase large chain";Ontology_id "GO:0000166,GO:0005739,GO:0006464,GO:0005840,GO:0016301,GO:0009536";Enzyme_code "EC:4.1.1.39,EC:2.7.11";Enzyme_name "Ribulose-bisphosphate carboxylase,Transferring phosphorus-containing groups";
Quercus_rubra_120313_comp33047_c0_seq1
#N/A
3.454914117
0.005698113
"ATP synthase subunit";Ontology_id "GO:0005739";
Quercus_rubra_120313_comp15719_c0_seq1
#N/A
4.961627004
0.00719461
"hypothetical protein TanjilG_12081";Ontology_id "GO:0016020";
Quercus_rubra_120313_comp25563_c0_seq1
#N/A
4.315359149
0.007770356
"PREDICTED: uncharacterized protein LOC108867875, partial";
Quercus_rubra_120313_comp22064_c0_seq1
#N/A
4.98158503
0.008437625
"hypothetical protein GLYMA_13G021700, partial";
Quercus_rubra_120313_comp13437_c0_seq1
#N/A
4.017293667
0.008598189
"hypothetical protein (mitochondrion)";Ontology_id "GO:0005739";
Quercus_rubra_120313_comp33342_c0_seq1
#N/A
4.273118768
0.008598189
"Cell wall-associated hydrolase";
Quercus_rubra_120313_comp59871_c0_seq1
#N/A
4.223705488
0.008598189
"photosystem II Z (chloroplast)";Ontology_id "GO:0006091,GO:0016020,GO:0015979,GO:0009536,GO:0009579";
Quercus_rubra_120313_comp11688_c0_seq1
#N/A
3.779405723
0.008871963
"hypothetical protein (mitochondrion)";Ontology_id "GO:0005739";
Quercus_rubra_120313_comp8060_c0_seq1
34.99
transport.misc
3.957771677
0.008871963
"ATP synthase subunit mitochondrial-like";Ontology_id "GO:0003824,GO:0005739,GO:0016020,GO:0005488,GO:0006810,GO:0005215";Enzyme_code "EC:1.9.3.1";Enzyme_name "Cytochrome-c oxidase";
Quercus_rubra_120313_comp29685_c0_seq9
#N/A
4.878996643
0.012523539
"hypothetical chloroplast RF34 (chloroplast)";Ontology_id "GO:0009535,GO:0005515,GO:0015979";
Quercus_rubra_120313_comp11813_c0_seq1
#N/A
5.79570738
0.014386079
"NADH dehydrogenase subunit 3 (chloroplast)";Ontology_id "GO:0048038,GO:0008137,GO:0016021,GO:0019684,GO:0055114,GO:0006810,GO:0005886,GO:0009535";Enzyme_code "EC:1.6.99.5,EC:1.6.99.3,EC:1.6.5.3";Enzyme_name "Acting on NADH or NADPH,NADH dehydrogenase,NADH:ubiquinone reductase (H(+)-translocating)";
Quercus_rubra_120313_comp30616_c0_seq6
27.4
RNA.RNA binding
3.701384983
0.014386079
"maturase K (chloroplast)";Ontology_id "GO:0003723,GO:0006139,GO:0009536";
Quercus_rubra_120313_comp30956_c0_seq2
8.1.9
TCA / org. transformation.TCA.malate DH
1.401517895
0.014478353
"malate cytoplasmic-like isoform X2";Ontology_id "GO:0005975,GO:0006091,GO:0003824";Enzyme_code "EC:1.1.1.37";Enzyme_name "Malate dehydrogenase";
Quercus_rubra_120313_comp20555_c0_seq1
34.99
transport.misc
3.730416134
0.015594024
"ATP synthase CF1 beta subunit (chloroplast)";Ontology_id "GO:0000166,GO:0009058,GO:0006139,GO:0006810,GO:0005886,GO:0009536,GO:0005215,GO:0009579,GO:0016787";Enzyme_code "EC:3.6.1.3,EC:3.6.1.15";Enzyme_name "Adenosinetriphosphatase,Nucleoside-triphosphate phosphatase";
Quercus_rubra_120313_comp7484_c0_seq1
#N/A
3.930440996
0.02437486
"NADH dehydrogenase subunit I (chloroplast)";Ontology_id "GO:0048038,GO:0005506,GO:0008137,GO:0019684,GO:0055114,GO:0051539,GO:0005886,GO:0009535";Enzyme_code "EC:1.6.99.5,EC:1.6.99.3,EC:1.6.5.3";Enzyme_name "Acting on NADH or NADPH,NADH dehydrogenase,NADH:ubiquinone reductase (H(+)-translocating)";
Quercus_rubra_120313_comp250909_c0_seq1
#N/A
4.719263714
0.045922461
"Retrovirus-related Pol poly from transposon TNT 1-94";
Quercus_rubra_120313_comp20456_c0_seq1
#N/A
4.685611653
0.049671143
"hypothetical protein MTR_5g067940";
Quercus_rubra_120313_comp25722_c0_seq3
#N/A
-2.063444765
7.06e-7
"sec-independent translocase chloroplastic";
Quercus_rubra_120313_comp29968_c1_seq1
#N/A
-10.59011133
0.000797539
"---NA---";
Quercus_rubra_120313_comp20517_c0_seq1
20.1.4
stress.biotic.kinases
-3.956456291
0.001815995
"probable LIM domain-containing serine threonine- kinase DDB_G0287001";Ontology_id "GO:0000166,GO:0006464,GO:0016301";Enzyme_code "EC:2.7.10,EC:2.7.10.2";Enzyme_name "Transferring phosphorus-containing groups,Non-specific protein-tyrosine kinase";
Quercus_rubra_120313_comp31375_c0_seq3
#N/A
-4.64789806
0.005436429
"hypothetical protein COLO4_31730";
Quercus_rubra_120313_comp25822_c0_seq1
#N/A
-1.267158634
0.02650972
"auxin transporter 2";Ontology_id "GO:0016020";
Quercus_rubra_120313_comp5711_c0_seq1
31.4
cell.vesicle transport
-1.746215869
0.031140601
"oxysterol-binding -related 4B";
Quercus_rubra_120313_comp159320_c0_seq1
#N/A
-4.753153196
0.034162322
"aldehyde oxidase GLOX-like";Ontology_id "GO:0016020";
Quercus_rubra_120313_comp245899_c0_seq1
34.99
transport.misc
-2.311674287
0.037076828
"pleiotropic drug resistance 2-like";Ontology_id "GO:0000166,GO:0006810,GO:0005886,GO:0005215,GO:0016787";Enzyme_code "EC:3.6.1.3,EC:3.6.1.15";Enzyme_name "Adenosinetriphosphatase,Nucleoside-triphosphate phosphatase";
Quercus_rubra_120313_comp9884_c0_seq1
34.19.2
transport.Major Intrinsic Proteins.TIP
-7.203144925
0.037076828
"aquaporin TIP1-3";Ontology_id "GO:0015840,GO:0005887,GO:0009705,GO:0006833,GO:0009992,GO:0015254,GO:0034220,GO:0042807,GO:0015250,GO:0015204";
Quercus_rubra_120313_comp16510_c0_seq1
28.1
DNA.synthesis/chromatin structure
-1.097987593
0.037791845
"homeobox knotted-1-like 3 isoform X1";Ontology_id "GO:0005634,GO:0003677,GO:0009058,GO:0006139";
Quercus_rubra_120313_comp18099_c0_seq1
#N/A
-2.194229434
0.037791845
"uncharacterized SDCCAG3 family -like";
Quercus_rubra_120313_comp23225_c0_seq1
#N/A
-1.436417369
0.037791845
"uncharacterized protein LOC18770571";Ontology_id "GO:0005773";
Quercus_rubra_120313_comp25291_c0_seq1
23.3.1.2
nucleotide metabolism.salvage.phosphoribosyltransferases.hgprt
-1.719762407
0.037791845
"probable xyloglucan galactosyltransferase GT19";Ontology_id "GO:0006464,GO:0009058,GO:0016740";
Quercus_rubra_120313_comp29287_c0_seq1
28.1
DNA.synthesis/chromatin structure
-2.197300956
0.037791845
"histone";Ontology_id "GO:0005634,GO:0003677,GO:0005515";
Quercus_rubra_120313_comp29589_c0_seq7
#N/A
-1.560996613
0.037791845
"thioredoxin chloroplastic";Ontology_id "GO:0003824,GO:0009536";Enzyme_code "EC:4.2.1.6";Enzyme_name "Galactonate dehydratase";
Quercus_rubra_120313_comp29400_c1_seq4
#N/A
-1.809551906
0.039347533
"beta-amyrin 11-oxidase-like";Ontology_id "GO:0003824,GO:0016020,GO:0008152,GO:0005488";
Quercus_rubra_120313_comp29057_c0_seq1
23.3
nucleotide metabolism.salvage
-1.688573575
0.041137797
"ABC transporter G family member 11-like";Ontology_id "GO:0005524,GO:0055085,GO:0016021,GO:0015716,GO:0015748,GO:0015416,GO:0005886";Enzyme_code "EC:3.6.1.3,EC:3.6.1.15,EC:3.6.3.28";Enzyme_name "Adenosinetriphosphatase,Nucleoside-triphosphate phosphatase,Phosphonate-transporting ATPase";