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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID286398_p.sativum_wa1_contig19099
AT1G74030
Q9C9C4
4.1.13
glycolysis.cytosolic branch.enolase
1.53
ENOLASE [cytoplasm]
ID_Pisum_sativum_v2_Contig4678
AT1G53310
Q9MAH0
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
0.51
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
ID297143_p.sativum_wa1_contig21264
AT1G53310
Q9MAH0
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.2
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
ID14082_GH719589
#N/A
#N/A
#N/A
1.7
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
ID_Pisum_sativum_v2_Contig7139
AT3G14940
Q84VW9
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.38
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
ID296901_p.sativum_wa1_contig28437
AT2G22480
Q8VYN6
4.2.4
glycolysis.plastid branch.phosphofructokinase (PFK)
1.47
PHOSPHOFRUCTOKINASE [plastid]
ID_Pisum_sativum_v2_Contig6823
AT2G22480
Q8VYN6
4.2.4
glycolysis.plastid branch.phosphofructokinase (PFK)
1.26
PHOSPHOFRUCTOKINASE [plastid]
ID265166_p.sativum_wa1_contig23674
AT1G32440
Q93Z53
4.2.14
glycolysis.plastid branch.pyruvate kinase (PK)
-0.53
PYRUVATE KINASE [plastid]
ID284266_p.sativum_wa1_contig33550
AT1G32440
Q93Z53
4.2.14
glycolysis.plastid branch.pyruvate kinase (PK)
-0.52
PYRUVATE KINASE [plastid]
ID_Pisum_sativum_v2_Contig2999
AT5G08570
Q9FNN1
4.1.14
glycolysis.cytosolic branch.pyruvate kinase (PK)
0.59
PYRUVATE KINASE [plastid]
ID277035_p.sativum_wa1_contig18485
AT5G52920
Q9FLW9
4.2.14
glycolysis.plastid branch.pyruvate kinase (PK)
-0.81
PYRUVATE KINASE [plastid]
ID272847_p.sativum_wa1_contig12510
AT3G22960
Q9LIK0
4.2.14
glycolysis.plastid branch.pyruvate kinase (PK)
-0.8
PYRUVATE KINASE [plastid]
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