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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID_Pisum_sativum_v2_Contig4052
AT5G18100
Q9FK60
21.6
redox.dismutases and catalases
-0.24
SUPEROXIDE DISMUTASE 3 [Cu,Zn]
ID_Pisum_sativum_v2_Contig4187
AT3G10920
O81235
21.6
redox.dismutases and catalases
-0.04
SUPEROXIDE DISMUTASE 1 [Mn]
ID291601_p.sativum_wa1_contig26572
AT4G39640
Q8VYW6
20.2
stress.abiotic
4.74
?-GLUTAMYL TRANSPEPTIDASE
ID278435_p.sativum_wa1_contig34236
AT4G39650
Q680I5
21.2.2
redox.ascorbate and glutathione.glutathione
5.21
?-GLUTAMYL TRANSPEPTIDASE
ID_Pisum_sativum_v2_Contig4841
#N/A
#N/A
#N/A
-0.03
GLUTAMATE-CYSTEINE LIGASE
ID286494_p.sativum_wa1_contig25210
AT5G27380
P46416
21.2.2
redox.ascorbate and glutathione.glutathione
-0.29
GLUTATHIONE SYNTHETASE
ID295758_p.sativum_wa1_contig30872
AT5G27380
P46416
21.2.2
redox.ascorbate and glutathione.glutathione
-0.24
GLUTATHIONE SYNTHETASE
ID_Pisum_sativum_v2_Contig36
AT3G04120
P25858
4.1.8
glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)
-0.57
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [cytoplasm]
ID_Pisum_sativum_v2_Contig6409
AT1G13440
Q9FX54
4.1.8
glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)
0.83
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [cytoplasm]
ID282363_p.sativum_wa1_contig24234
AT3G05170
Q9MAA2
4.3.12
glycolysis.unclear/dually targeted.phosphoglycerate mutase
-0.76
PHOSPHOGLYCERATE MUTASE [cytoplasm]
ID290074_p.sativum_wa1_contig28839
AT3G50520
Q9SCS3
4.3.12
glycolysis.unclear/dually targeted.phosphoglycerate mutase
0.93
PHOSPHOGLYCERATE MUTASE [cytoplasm]
ID282982_p.sativum_wa1_contig26055
AT3G05170
Q9MAA2
4.3.12
glycolysis.unclear/dually targeted.phosphoglycerate mutase
1.61
PHOSPHOGLYCERATE MUTASE [cytoplasm]
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