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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID_Pisum_sativum_v2_Contig1642
AT1G75270
Q9FRL8
21.2.1
redox.ascorbate and glutathione.ascorbate
0.57
DEHYDROASCORBATE REDUCTASE 2
ID_Pisum_sativum_v2_Contig8801
AT5G16710
Q8LE52
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.42
DEHYDROASCORBATE REDUCTASE 3 [chloroplast]
ID262802_p.sativum_wa1_contig12414
AT5G16710
Q8LE52
21.2.1
redox.ascorbate and glutathione.ascorbate
0.01
DEHYDROASCORBATE REDUCTASE 3 [chloroplast]
ID281337_p.sativum_wa1_contig33760
AT2G43350
O22850
21.2
redox.ascorbate and glutathione
0.07
GLUTATHIONE PEROXIDASE 3
ID263199_p.sativum_wa1_contig27565
AT2G43350
O22850
21.2
redox.ascorbate and glutathione
0.28
GLUTATHIONE PEROXIDASE 3
ID_Pisum_sativum_v2_Contig7800
AT3G63080
Q9LYB4
21.2.2
redox.ascorbate and glutathione.glutathione
-0.45
GLUTATHIONE PEROXIDASE 4
ID_Pisum_sativum_v2_Contig1327
AT4G11600
O48646
21.2.2
redox.ascorbate and glutathione.glutathione
0.19
GLUTATHIONE PEROXIDASE 6
ID270618_p.sativum_wa1_contig03738
AT2G25080
P52032
21.2
redox.ascorbate and glutathione
-0.07
GLUTATHIONE PEROXIDASE 7
ID_Pisum_sativum_v2_Contig8768
AT3G24170
P48641
21.2.2
redox.ascorbate and glutathione.glutathione
1.23
GLUTATHIONE REDUCTASE [cytoplasm]
ID_Pisum_sativum_v2_Contig4628
AT3G54660
P42770
21.2.2
redox.ascorbate and glutathione.glutathione
-0.2
GLUTATHIONE REDUCTASE [chloroplast]
ID_Pisum_sativum_v2_Contig4113
AT3G52880
Q9LFA3
21.2
redox.ascorbate and glutathione
-0.08
MONODEHYDROASCORBATE REDUCTASE 1
ID289338_p.sativum_wa1_contig19560
AT3G27820
Q9LK94
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.36
MONODEHYDROASCORBATE REDUCTASE 4
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