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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID262852_p.sativum_wa1_contig18926
AT5G40760
Q9FJI5
7.1.1
OPP.oxidative PP.G6PD
1.91
Pentose phosphate pathway, oxidative: GLUCOSE 6-PHOSPHATE DEHYDROGENASE
ID_Pisum_sativum_v2_Contig5003
AT3G02360
Q9FWA3
7.1.3
OPP.oxidative PP.6-phosphogluconate dehydrogenase
0.68
Pentose phosphate pathway, oxidative: 6-PHOSPHOGLUCONATE DEHYDROGENASE
ID_Pisum_sativum_v2_Contig1969
AT3G04790
Q9S726
1.3.10
PS.calvin cycle.Rib5P Isomerase
-0.73
Pentose phosphate pathway, non-reductive: RIBOSE 5-PHOSPHATE ISOMERASE
ID299182_p.sativum_wa1_contig21283
AT2G01290
Q9ZU38
35.2
not assigned.unknown
0.5
Pentose phosphate pathway, non-reductive: RIBOSE 5-PHOSPHATE ISOMERASE
ID292516_p.sativum_wa1_contig29219
AT4G14890
O23344
26.30
misc. other Ferredoxins and Rieske domain
-0.57
Pentose phosphate pathway: electron transfer
ID296830_p.sativum_wa1_contig18841
AT4G39830
A0A1P8B4N7
21.2.1
redox.ascorbate and glutathione.ascorbate
5.45
ASCORBATE OXIDASE [cell wall]
ID_Pisum_sativum_v2_Contig4699
AT5G21105
F4K6Z6
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.12
ASCORBATE OXIDASE [cell wall]
ID270485_p.sativum_wa1_contig24721
AT1G07890
Q05431
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.09
ASCORBATE PEROXIDASE 1 [cytoplasm]
ID290629_p.sativum_wa1_contig26708
AT4G35000
Q42564
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.27
ASCORBATE PEROXIDASE 3 [microsome]
ID284080_p.sativum_wa1_contig21676
AT4G35000
Q42564
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.28
ASCORBATE PEROXIDASE 3 [microsome]
ID_Pisum_sativum_v2_Contig5697
AT1G77490
Q42593
21.2.1
redox.ascorbate and glutathione.ascorbate
0.01
ASCORBATE PEROXIDASE [thylakoid]
ID_Pisum_sativum_v2_Contig4094
AT4G35090
P25819
21.6
redox.dismutases and catalases
-0.63
CATALASE 2
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