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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID297249_p.sativum_wa1_contig34819
AT1G49380
Q9XIA4
9.6
mitochondrial electron transport / ATP synthesis.cytochrome c
-0.69
CYTOCHROME C
ID17056_EX570908
#N/A
#N/A
#N/A
0.61
CYTOCHROME C
ID263334_p.sativum_wa1_contig08262
AT3G51790
Q96326
9.6
mitochondrial electron transport / ATP synthesis.cytochrome c
1.02
CYTOCHROME C
ID_Pisum_sativum_v2_Contig2148
AT1G80230
Q9SSB8
9.7
mitochondrial electron transport / ATP synthesis.cytochrome c oxidase
1.03
CYTOCHROME C OXIDASE
ID274179_p.sativum_wa1_contig22645
AT4G17260
O23569
5.1
fermentation.LDH
2.33
Fermentation: LACTATE DEHYDROGENASE
ID270381_p.sativum_wa1_contig10911
AT4G36250
Q70E96
5.10
fermentation.aldehyde dehydrogenase
-1.25
Fermentation: ALDEHYDE DEHYDROGENASE
ID266021_p.sativum_wa1_contig20179
AT1G44170
Q70DU8
5.10
fermentation.aldehyde dehydrogenase
4.35
Fermentation: ALDEHYDE DEHYDROGENASE
ID_Pisum_sativum_v2_Contig5230
AT4G36250
Q70E96
5.10
fermentation.aldehyde dehydrogenase
-1.19
Fermentation: ALDEHYDE DEHYDROGENASE
ID295295_p.sativum_wa1_contig08348
AT1G23800
Q8S528
5.10
fermentation.aldehyde dehydrogenase
1
Fermentation: ALDEHYDE DEHYDROGENASE
ID263664_p.sativum_wa1_contig13195
AT5G09660
Q9ZP05
6.3
gluconeogenesis / glyoxylate cycle.Malate DH
-0.63
Gluconeogenesis / glyoxylate cycle: MALATE DEHYDROGENASE
ID268005_p.sativum_wa1_contig11567
AT1G24280
Q8L743
7.1.1
OPP.oxidative PP.G6PD
-1.1
Pentose phosphate pathway, oxidative: GLUCOSE 6-PHOSPHATE DEHYDROGENASE
ID_Pisum_sativum_v2_Contig3116
AT5G13110
Q9FY99
7.1.1
OPP.oxidative PP.G6PD
-0.55
Pentose phosphate pathway, oxidative: GLUCOSE 6-PHOSPHATE DEHYDROGENASE
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