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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID_Pisum_sativum_v2_Contig2147
AT1G74730
Q94F10
35.2
not assigned.unknown
-0.69
NADH-DEHYDROGENASE [complex I, carbonic anhydrase]
ID266675_p.sativum_wa1_contig28876
AT4G29330
Q8VZU9
29.5
protein.degradation
4.1
NADH-DEHYDROGENASE [localization unclear]
ID_Pisum_sativum_v2_Contig3718
ATMG00980
P92532
29.2.1.1.2.2.2
protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.50S subunit.L2
-0.82
NADH-DEHYDROGENASE [localization unclear]
ID_Pisum_sativum_v2_Contig4589
AT4G05020
Q94BV7
9.2.1.2
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.external
1.45
NADH-DEHYDROGENASE [type II, external]
ID_Pisum_sativum_v2_Contig3315
AT2G29990
O80874
9.2.1.4
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix
3.31
NADH-DEHYDROGENASE [type II, internal matrix]
ID_Pisum_sativum_v2_Contig8415
AT1G07180
Q8GWA1
9.2.1.4
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix
-0.75
NADH-DEHYDROGENASE [type II, internal matrix]
ID270489_p.sativum_wa1_contig25191
AT3G22370
Q39219
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
1.24
ALTERNATIVE OXIDASE
ID_Pisum_sativum_v2_Contig2718
AT5G64210
O22049
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
2.52
ALTERNATIVE OXIDASE
ID272230_p.sativum_wa1_contig10126
AT5G64210
O22049
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
2.7
ALTERNATIVE OXIDASE
ID281263_p.sativum_wa1_contig28984
AT4G10040
Q9T0G2
9.6
mitochondrial electron transport / ATP synthesis.cytochrome c
1.5
CYTOCHROME C
ID281290_p.sativum_wa1_contig30839
AT4G10040
Q9T0G2
9.6
mitochondrial electron transport / ATP synthesis.cytochrome c
0.66
CYTOCHROME C
ID_Pisum_sativum_v2_Contig7865
AT1G49380
Q9XIA4
9.6
mitochondrial electron transport / ATP synthesis.cytochrome c
-0.71
CYTOCHROME C
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