Species & Dataset
Experiment
Foliar Ozone Injury
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Pisum sativum
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Common name: Garden pea
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Family: Fabaceae
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Cultivar: Pisum sativum L.
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Tissue: Fifth leaf from the top
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Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)
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Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)
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Ozone exposure: Throughout the experiment (8 hours/day)
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Sampling time: 11-13 days after planting
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Platform: Hiseq 2000 (Illumina)
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Year of study: 2015
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Location: Urbana, USA

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops
Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.
Data repository: NCBI [GenBank: SRP009826]
Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.
Gene id | AGI Gene Code | Uniprot ID | Bin Code | Bin Name | log2FC | Functional Annotation |
|---|---|---|---|---|---|---|
ID_Pisum_sativum_v2_Contig2147 | AT1G74730 | Q94F10 | 35.2 | not assigned.unknown | -0.69 | NADH-DEHYDROGENASE [complex I, carbonic anhydrase] |
ID266675_p.sativum_wa1_contig28876 | AT4G29330 | Q8VZU9 | 29.5 | protein.degradation | 4.1 | NADH-DEHYDROGENASE [localization unclear] |
ID_Pisum_sativum_v2_Contig3718 | ATMG00980 | P92532 | 29.2.1.1.2.2.2 | protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.50S subunit.L2 | -0.82 | NADH-DEHYDROGENASE [localization unclear] |
ID_Pisum_sativum_v2_Contig4589 | AT4G05020 | Q94BV7 | 9.2.1.2 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.external | 1.45 | NADH-DEHYDROGENASE [type II, external] |
ID_Pisum_sativum_v2_Contig3315 | AT2G29990 | O80874 | 9.2.1.4 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix | 3.31 | NADH-DEHYDROGENASE [type II, internal matrix] |
ID_Pisum_sativum_v2_Contig8415 | AT1G07180 | Q8GWA1 | 9.2.1.4 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix | -0.75 | NADH-DEHYDROGENASE [type II, internal matrix] |
ID270489_p.sativum_wa1_contig25191 | AT3G22370 | Q39219 | 9.4 | mitochondrial electron transport / ATP synthesis.alternative oxidase | 1.24 | ALTERNATIVE OXIDASE |
ID_Pisum_sativum_v2_Contig2718 | AT5G64210 | O22049 | 9.4 | mitochondrial electron transport / ATP synthesis.alternative oxidase | 2.52 | ALTERNATIVE OXIDASE |
ID272230_p.sativum_wa1_contig10126 | AT5G64210 | O22049 | 9.4 | mitochondrial electron transport / ATP synthesis.alternative oxidase | 2.7 | ALTERNATIVE OXIDASE |
ID281263_p.sativum_wa1_contig28984 | AT4G10040 | Q9T0G2 | 9.6 | mitochondrial electron transport / ATP synthesis.cytochrome c | 1.5 | CYTOCHROME C |
ID281290_p.sativum_wa1_contig30839 | AT4G10040 | Q9T0G2 | 9.6 | mitochondrial electron transport / ATP synthesis.cytochrome c | 0.66 | CYTOCHROME C |
ID_Pisum_sativum_v2_Contig7865 | AT1G49380 | Q9XIA4 | 9.6 | mitochondrial electron transport / ATP synthesis.cytochrome c | -0.71 | CYTOCHROME C |