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Species & Dataset

Experiment

Foliar Ozone Injury

  • Pisum sativum

  • Common name: Garden pea

  • Family: Fabaceae

  • Cultivar: Pisum sativum L.

  • Tissue: Fifth leaf from the top

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  • Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

pisum injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene id
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annotation
ID_Pisum_sativum_v2_Contig4373
AT4G35830
Q42560
8.1.3
TCA / org transformation.TCA.aconitase
0.52
ACONITASE
ID_Pisum_sativum_v2_Contig3045
AT1G65930
Q9SRZ6
8.1.4
TCA / org transformation.TCA.IDH
1.01
ISOCITRATE DEHYDROGENASE
ID296188_p.sativum_wa1_contig11295
AT1G65930
Q9SRZ6
8.1.4
TCA / org transformation.TCA.IDH
0.67
ISOCITRATE DEHYDROGENASE
ID_Pisum_sativum_v2_Contig5799
AT5G23250
Q8LAD2
8.1.6
TCA / org transformation.TCA.succinyl-CoA ligase
0.59
SUCCINYL-CoA LIGASE
ID_Pisum_sativum_v2_Contig238
AT1G04410
P93819
8.2.9
TCA / org transformation.other organic acid transformatons.cyt MDH
-0.81
MALATE DEHYDROGENASE
ID284036_p.sativum_wa1_contig18557
AT5G25880
Q9XGZ0
8.2.10
TCA / org transformation.other organic acid transformatons.malic
2.01
MALATE OXIDOREDUCTASE
ID_Pisum_sativum_v2_Contig4372
AT5G11670
Q9LYG3
8.2.10
TCA / org transformation.other organic acid transformatons.malic
0.85
MALATE OXIDOREDUCTASE
ID_Pisum_sativum_v2_Contig1835
AT3G06650
Q9C522
8.2.11
TCA / org transformation.other organic acid transformatons.atp-citrate lyase
0.61
ATP-CITRATE LYASE
ID298794_p.sativum_wa1_contig09721
AT5G14740
P42737
8.3
TCA / org transformation.carbonic anhydrases
0.82
CARBONIC ANHYDRASE
ID_Pisum_sativum_v2_Contig7774
AT3G27890
Q9LK88
9.1.1
mitochondrial electron transport / ATP synthesis.NADH-DH.complex I
2.43
NADH-DEHYDROGENASE [complex I]
ID271967_p.sativum_wa1_contig23606
AT4G28510
O49460
9.1.1
mitochondrial electron transport / ATP synthesis.NADH-DH.complex I
-1.32
NADH-DEHYDROGENASE [complex I]
ID266822_p.sativum_wa1_contig10263
AT3G27890
Q9LK88
9.1.1
mitochondrial electron transport / ATP synthesis.NADH-DH.complex I
4.31
NADH-DEHYDROGENASE [complex I]
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