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Species & Dataset

Experiment

Foliar Ozone Injury

  • Phaseolus vulgaris

  • Common name: Common bean

  • Family: Fabaceae

  • Cultivar: Phaseolus vulgaris L.

  • Tissue: Shoot leaves

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  •  Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Phaseolus injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crop 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annnotation
Phvul.001G259000.1
AT1G13440
Q9FX54
4.1.8
glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)
0.65
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [cytoplasm]
Phvul.004G127500.1
AT1G74030
Q9C9C4
4.1.13
glycolysis.cytosolic branch.enolase
0.74
ENOLASE [cytoplasm]
Phvul.004G078400.1
AT4G26390
O65595
4.1.14
glycolysis.cytosolic branch.pyruvate kinase (PK)
-1.43
PYRUVATE KINASE [cytoplasm]
Phvul.003G024800.1
AT1G53310
Q9MAH0
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
-1.64
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
Phvul.005G066400.1
AT3G14940
Q84VW9
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.55
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
Phvul.002G096000.1
AT5G17530
Q8W4R0
4.2.2
glycolysis.plastid branch.phosphoglucomutase (PGM)
-1.63
PHOSPHOGLUCOMUTASE [plastid]
Phvul.008G180200.1
AT5G42740
P34795
4.2.3
glycolysis.plastid branch.glucose-6-phosphate isomerase
-0.6
GLUCOSE-6-PHOSPHATE ISOMERASE [cytoplasm]
Phvul.002G306800.1
AT5G56630
Q9C5J7
4.1.4
glycolysis.cytosolic branch.phosphofructokinase (PFK)
1.41
PHOSPHOFRUCTOKINASE [plastid]
Phvul.011G090600.1
AT3G50520
Q9SCS3
4.3.12
glycolysis.unclear/dually targeted.phosphoglycerate mutase
-0.68
PHOSPHOGLYCERATE MUTASE [localization unclear]
Phvul.003G106700.1
AT1G54220
Q5M729
13.2.4.1
amino acid metabolism.degradation.branched chain group.shared
0.9
PYRUVATE DEHYDROGENASE [E2]
Phvul.008G239900.1
AT1G54340
Q9SLK0
8.1.4
TCA / org transformation.TCA.IDH
0.58
ISOCITRATE DEHYDROGENASE
Phvul.003G253200.1
AT2G18450
Q9ZPX5
8.1.7
TCA / org transformation.TCA.succinate dehydrogenase
0.78
SUCCINATE DEHYDROGENASE
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