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Species & Dataset

Experiment

Foliar Ozone Injury

  • Phaseolus vulgaris

  • Common name: Common bean

  • Family: Fabaceae

  • Cultivar: Phaseolus vulgaris L.

  • Tissue: Shoot leaves

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  •  Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Phaseolus injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crop 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annnotation
Phvul.002G072100.1
AT3G48000
Q9SU63
5.10
fermentation.aldehyde dehydrogenase
1.52
Fermentation: ALDEHYDE DEHYDROGENASE
Phvul.002G314000.1
AT3G48000
Q9SU63
5.10
fermentation.aldehyde dehydrogenase
0.7
Fermentation: ALDEHYDE DEHYDROGENASE
Phvul.004G162300.1
AT3G48000
Q9SU63
5.10
fermentation.aldehyde dehydrogenase
1.88
Fermentation: ALDEHYDE DEHYDROGENASE
Phvul.009G226700.1
AT1G79440
Q9SAK4
5.10
fermentation.aldehyde dehydrogenase
0.96
Fermentation: ALDEHYDE DEHYDROGENASE
Phvul.003G199100.2
AT1G23800
Q8S528
5.10
fermentation.aldehyde dehydrogenase
0.8
Fermentation: ALDEHYDE DEHYDROGENASE
Phvul.003G209100.1
6.2
gluconeogenesis / glyoxylate cycle.malate synthase
2.68
Gluconeogenesis / glyoxylate cycle: CITRATE SYNTHASE
Phvul.002G007700.1
35.2
not assigned.unknown
-3.37
Gluconeogenesis / glyoxylate cycle: MALATE DEHYDROGENASE
Phvul.002G139200.1
AT5G65690
B5X574
6.4
gluconeogenesis / glyoxylate cycle.PEPCK
2.19
Gluconeogenesis / glyoxylate cycle: PEPCK
Phvul.011G105500.1
AT1G77060
O49290
6.9
gluconeogenesis / glyoxylate cycle.isocitrate lyase
9.52
Gluconeogenesis / glyoxylate cycle: ISOCITRATE LYASE
Phvul.009G049200.1
AT3G49360
Q8LG70
7.1.2
OPP.oxidative PP.6-phosphogluconolactonase
-0.89
Pentose phosphate pathway, oxidative: 6-PHOSPHOGLUCONOLACTONASE
Phvul.004G150100.1
AT4G20930
Q9SUC0
35.1
not assigned.no ontology
0.81
Pentose phosphate pathway, oxidative: 6-PHOSPHOGLUCONATE DEHYDROGENASE
Phvul.006G127500.1
AT1G17650
F4I907
13.2.4.3
amino acid metabolism.degradation.branched chain group.valine
0.94
Pentose phosphate pathway, oxidative: 6-PHOSPHOGLUCONATE DEHYDROGENASE
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