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Species & Dataset

Experiment

Foliar Ozone Injury

  • Phaseolus vulgaris

  • Common name: Common bean

  • Family: Fabaceae

  • Cultivar: Phaseolus vulgaris L.

  • Tissue: Shoot leaves

  • Ozone concentration: Ambient ozone (12.5 nL L−1 ± 0.96 nL L−1)

  •  Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Phaseolus injury.jpg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crop 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Functional Annnotation
Phvul.004G013500.1
AT5G14740
P42737
8.3
TCA / org transformation.carbonic anhydrases
-0.7
CARBONIC ANHYDRASE
Phvul.009G178900.1
AT3G01500
P27140
8.3
TCA / org transformation.carbonic anhydrases
1.09
CARBONIC ANHYDRASE
Phvul.004G013500.3
AT5G14740
P42737
8.3
TCA / org transformation.carbonic anhydrases
-0.7
CARBONIC ANHYDRASE
Phvul.006G192400.1
AT4G05020
Q94BV7
9.2.1.2
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.external
2.41
NADH-DEHYDROGENASE [type II, external]
Phvul.002G223400.1
AT1G07180
Q8GWA1
9.2.1.4
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix
1.57
NADH-DEHYDROGENASE [type II, internal matrix]
Phvul.002G175300.1
AT2G29990
O80874
9.2.1.4
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix
-2.41
NADH-DEHYDROGENASE [type II, internal matrix]
Phvul.008G260300.1
AT2G29990
O80874
9.2.1.4
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix
0.7
NADH-DEHYDROGENASE [type II, internal matrix]
Phvul.011G058400.1
AT3G51790
Q96326
9.6
mitochondrial electron transport / ATP synthesis.cytochrome c
0.76
CYTOCHROME C
Phvul.004G070000.1
ATCG00830
29.2.1.1.1.2.2
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L2
-1.24
CYTOCHROME C OXIDASE
Phvul.003G219400.1
AT2G22780
O82399
5.1
fermentation.LDH
0.59
Fermentation: LACTATE DEHYDROGENASE
Phvul.008G243200.1
AT2G22780
O82399
5.2
fermentation.PDC
0.6
Fermentation: PYRUVATE DECARBOXYLASE
Phvul.008G095400.1
AT5G01320
Q9M040
5.2
fermentation.PDC
-0.86
Fermentation: PYRUVATE DECARBOXYLASE
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