Species & Dataset

Experiment

Foliar Ozone Injury

  • Oryza sativa

  • Common name: Asian rice

  • Family: Poaceae

  • Cultivar: cv. Nipponbare; O. sativa L. japonica-type

  • Tissue: Third and fourth leaves of 2-week old rice plant

  • Ozone concentration: ​ 0.2 ppm

  • Ozone exposure: 24 hours

  • Sampling time: ​ 0, 6, 12 and 24 hrs after ozone treatment

  • Platform: DNA Microarray

  • Year of study: 2008

  • Location: Japan

Injury Rice.jpeg

Title: Integrated Transcriptomics, Proteomics, and Metabolomics analyses to survey ozone responses in the leaves of rice seedling

 

Summary: Ozone (O3), a serious air pollutant, is known to significantly reduce photosynthesis, growth, and yield and to cause foliar injury and senescence. Here, integrated transcriptomics, proteomics, and metabolomics approaches were applied to investigate the molecular responses of O3 in the leaves of 2-week-old rice (cv. Nipponbare) seedlings exposed to 0.2 ppm O3 for a period of 24 h. On the basis of the morphological alteration of O3-exposed rice leaves, transcript profiling of rice genes was performed in leaves exposed for 1, 12, and 24 h using rice DNA microarray chip. A total of 1535 non redundant genes showed altered expression of more than 5-fold over the control, representing 8 main functional categories. Genes involved in information storage and processing (10%) and cellular processing and signaling categories (24%) were highly represented within1h of O3 treatment; transcriptional factor and signal transduction, respectively, were the main subcategories. Genes categorized into information storage and processing (17, 23%), cellular processing and signaling (20, 16%) and metabolism (18, 19%) were mainly regulated at 12 and 24 h; their main subcategories were ribosomal protein, posttranslational modification, and signal transduction and secondary metabolites biosynthesis, respectively. Two dimensional gel electrophoresis-based proteomics analyses in combination with tandem mass spectrometer identified 23 differentially expressed protein spots (21 non redundant proteins) in leaves exposed to O3 for 24 h compared to respective control.Identified proteins were found to be involved in cellular processing and signaling (32%), photosynthesis (19%), and defense (14%). Capillary electrophoresis-mass spectrometry-based metabolomic profiling revealed accumulation of amino acids, gamma-aminobutyric acid, and glutathione in O3 exposed leaves until 24 h over control. This systematic survey showed that O3 triggers a chain reaction of altered gene, protein and metabolite expressions involved in multiple cellular processes in rice.

Reference: Cho, K., Shibato, J., Agrawal, G.K., Jung, Y.H., Kubo, A., Jwa, N.S., Tamogami, S., Satoh, K., Kikuchi, S., Higashi, T. and Kimura, S., 2008. Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling. Journal of proteome research, 7(7), pp.2980-2998.

Gene Identifier
Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange (1hr)
FoldChange (12hr)
FoldChange (24hr)
Functional annotation
AK066682
LOC_Os12g14440
26.16
misc.myrosinases-lectin-jacalin
NA
NA
13.12
H. vulgare putative 32.7 kDa jasmonate-induced protein mRNA, complete cds.|PLN
AK067087
LOC_Os01g65130
35.2
not assigned.unknown
NA
10.52
NA
Gene of resistance against plant diseases induced by microorganism .|PAT
AK067137
LOC_Os03g63910
35.1.5
not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
NA
8.50
NA
A. thaliana At4g16390 mRNA for putative salt-inducible protein, complete cds, clone.|PLN
AK067214
LOC_Os05g31620
Q6L4D4
30.3
signalling.calcium
5.01
NA
NA
J. oxycedrus pollen allergen Jun o 4 mRNA, complete cds.|PLN
AK069182
LOC_Os12g43440
20.1
stress.biotic
NA
22.95
19.92
O.sativa mRNA for thaumatin-like protein.|PLN
AK069420
LOC_Os07g02590
35.2
not assigned.unknown
NA
6.75
NA
O. sativa NBS-LRR-like protein (YR48) mRNA; Fusarium resistance protein I2C-5-like
AK069814
LOC_Os05g07940
13.2.3.2
amino acid metabolism.degradation.aspartate family.threonine
NA
7.24
NA
A. thaliana clone 21663 mRNA; Glyoxalase/bleomycin resistance protein
AK070350
LOC_Os03g27080
27.3.39
RNA.regulation of transcription.AtSR Transcription Factor family
21.49
6.29
NA
L. esculentum ER66 protein (ER66) mRNA: Anther ethylene-upregulated protein ER1
AK070403
LOC_Os03g02020
35.2
not assigned.unknown
NA
5.72
NA
A. thaliana hypothetical protein (T26B15.6) mRNA, partial cds.|PLN ;
AK070872
LOC_Os03g17790
20.2.2
stress.abiotic.cold
NA
NA
6.45
H. vulgare blt101 mRNA.|PLN: low-temperature induced proteins
AK070914
LOC_Os01g32780
20.2.99
stress.abiotic.unspecified
NA
5.57
7.87
A. thaliana clone 27109 mRNA, complete sequence.|PLN
AK070986
LOC_Os02g47650
20.2.99
stress.abiotic.unspecified
NA
19.05
7.26
A. thaliana clone 31655 mRNA, complete sequence.|PLN
AK070995
LOC_Os06g02510
29.2.2
protein.synthesis.misc ribosomal protein
NA
NA
5.24
O. sativa mRNA for putative cold-induced protein (cip1 gene).|PLN
AK071108
LOC_Os02g39930
34.99
transport.misc
NA
NA
9.82
T. aestivum temperature stress-induced lipocalin (Tatil) mRNA, complete cds.|PLN
AK071613
LOC_Os12g36880
35.2
not assigned.unknown
NA
266.54
354.46
Rice mRNA for probenazole-inducible protein PBZ1, complete cds.|PLN
AK071615
LOC_Os07g15880
35.1
not assigned.no ontology
NA
18.04
11.53
Z. mays variety B73 prohibitin (PHB1) mRNA, complete cds.|PLN
AK072413
LOC_Os01g54510
35.2
not assigned.unknown
9.87
6.66
NA
A. thaliana At1g29690/F15D2_24 mRNA; Membrane attack complex
AK072989
LOC_Os07g48500
Q6Z4N4
35.1.41
not assigned.no ontology.hydroxyproline rich proteins
NA
NA
10.70
O. sativa mRNA for novel protein, osr40c1.|PLN: Stress responsive protein
AK099157
LOC_Os12g36850
35.2
not assigned.unknown
NA
60.59
43.16
Rice mRNA for probenazole-inducible protein PBZ1, complete cds.|PLN
AK099685
LOC_Os11g40570
35.2
not assigned.unknown
NA
9.45
NA
A. thaliana clone 95546 mRNA: Plant viral-response family protein,
AK099946
LOC_Os12g43430
20.1
stress.biotic
NA
15.13
14.11
O.sativa mRNA for thaumatin-like protein.|PLN
AK100135
#N/A
#N/A
#N/A
NA
53.80
19.78
N. tabacum NtPDR1 mRNA for pleiotropic drug resistance like protein, complete cds.|PLN
AK100778
LOC_Os09g34150
#N/A
#N/A
18.42
NA
NA
O. sativa PibH8 mRNA, complete cds.|PLN; A57072 disease resistance protein RPM1
AK100858
#N/A
#N/A
#N/A
16.53
NA
NA
N. tabacum NtPDR1 mRNA for pleiotropic drug resistance like protein, complete cds.
AK101577
LOC_Os08g03520
20.2.2
stress.abiotic.cold
NA
11.14
7.82
T. aestivum WCSP1 mRNA for cold shock protein-1, complete cds.|PLN
AK102970
LOC_Os03g46060
20.1
stress.biotic
NA
16.33
19.30
O. sativa pathogenesis-related thaumatin-like protein mRNA, complete cds.|PLN
AK105010
LOC_Os07g47510
35.1
not assigned.no ontology
NA
6.14
5.28
A. thaliana clone 13300 mRNA, complete sequence.|PLN
AK105311
LOC_Os07g33780
Q8GU86
34.16
transport.ABC transporters and multidrug resistance systems
NA
62.60
31.49
N. tabacum NtPDR1 mRNA for pleiotropic drug resistance like protein, complete cds.|PLN
AK105384
LOC_Os02g37930
35.1
not assigned.no ontology
15.98
9.32
5.25
A. thaliana clone 108472 mRNA, complete sequence.|PLN
AK105971
LOC_Os03g62790
35.1
not assigned.no ontology
19.68
NA
NA
L. esculentum pirin mRNA; human PIRIN is induced during programmed cell death
AK106064
LOC_Os06g13160
35.2
not assigned.unknown
5.97
5.17
NA
N. tabacum mRNA for TMV response-related gene product, complete cds.|PLN
AK106149
LOC_Os07g47510
35.1
not assigned.no ontology
NA
8.64
6.53
A. thaliana clone 13300 mRNA, complete sequence.|PLN
AK106297
LOC_Os05g34220
20.1
stress.biotic
5.63
NA
NA
O. sativa NBS-LRR-like protein (YR48) mRNA; Disease resistance protein family protein
AK107735
LOC_Os06g48960
20.1
stress.biotic
NA
8.40
15.41
A. thaliana AT3g28930/K5K13_1 mRNA, complete cds.|PLN
AK107926
LOC_Os01g28450
20.1
stress.biotic
NA
89.29
91.65
T. aestivum pathogenesis-related protein 1 mRNA, complete cds.|PLN
AK108373
LOC_Os01g50100
34.16
transport.ABC transporters and multidrug resistance systems
22.82
24.77
11.06
T. aestivum tamdr1 mRNA for multidrug resistance protein 1 homolog, complete cds.|PLN
AK111665
LOC_Os11g12340
20.1
stress.biotic
NA
15.94
6.88
O. sativa (japonica cultivar-group) mRNA for RPR1, complete cds.|PLN
AK058810
LOC_Os05g35740
29.5.1
protein.degradation.subtilases
NA
11.02
7.90
A. thaliana clone 37751 mRNA, complete sequence.|PLN
AK061770
LOC_Os01g58890
P09229
29.5.3
protein.degradation.cysteine protease
NA
8.41
NA
O. sativa oryzacystatin mRNA: Cysteine proteinase inhibitor-I
AK062495
LOC_Os01g42860
#N/A
#N/A
NA
11.22
23.88
H. vulgare mRNA for subtilisin-chymotrypsin inhibitor 2.|PLN
AK064050
LOC_Os01g03340
35.2
not assigned.unknown
NA
11.56
23.78
O. sativa Bowman-Birk type trypsin inhibitor mRNA, complete cds.|PLN
AK101060
LOC_Os02g03280
Q9MBD8
20.1
stress.biotic
28.79
15.73
NA
O. sativa BI-1 mRNA for Bax inhibitor-1, complete cds.|PLN
AK102768
LOC_Os03g31510
Q10J94
29.5.3
protein.degradation.cysteine protease
7.82
NA
NA
A. thaliana clone 31680 mRNA, complete sequence.|PLN; Proteinase inhibitor I25
AK103500
LOC_Os06g02600
33.99
development.unspecified
NA
6.77
8.58
A. thaliana mRNA for plastid protein.|PLN
AK059773
LOC_Os08g36630
8.3
TCA / org. transformation.carbonic anhydrases
NA
8.55
7.12
A. thaliana putative storage protein (At1g08080) mRNA, complete cds.|PLN
AK059812
LOC_Os08g13440
Q6ZCR3
20.2.99
stress.abiotic.unspecified
NA
6.93
8.24
O. sativa germin-like protein 2 (GER2) mRNA, complete cds.|PLN
AK059817
LOC_Os02g32980
Q6ESF0
20.2.99
stress.abiotic.unspecified
16.00
9.22
NA
A. thaliana clone 19265 mRNA: RmlC-like cupin family protein (Germin-like protein)
AK059860
LOC_Os12g05260
O81277
33.99
development.unspecified
NA
6.17
NA
O. sativa putative phytosulfokine peptide precursor (PSK3) mRNA, complete cds.|PLN
AK062151
LOC_Os01g53520
35.1
not assigned.no ontology
NA
11.40
NA
A. thaliana AT4g23630/F9D16_100 mRNA: putative 24 kDa seed maturation protein
AK105773
LOC_Os10g36980
26.10
misc.cytochrome P450
NA
14.11
11.55
A. thaliana cytochrome p450, putative (At1g64900) mRNA, complete cds.|PLN
AK105913
LOC_Os02g36110
26.10
misc.cytochrome P450
NA
44.89
26.19
O. sativa Cyt-P450 monooxygenase (PM-II) mRNA, complete cds.|PLN
AK106081
LOC_Os07g44140
26.10
misc.cytochrome P450
26.97
11.88
NA
A. thaliana At2g46960/F14M4.21 mRNA: putative cytochrome P450
AK106420
LOC_Os03g05900
26.7
misc.oxidases - copper, flavone etc.
7.61
NA
6.56
A. thaliana mRNA for monooxygenase 2.|PLN
AK108382
LOC_Os07g11870
26.10
misc.cytochrome P450
NA
15.02
8.01
S. tuberosum mRNA for cytochrome P450 (CYP71D4 gene).|PLN
AK108697
LOC_Os06g45960
26.10
misc.cytochrome P450
NA
5.33
NA
G. max cytochrome P450 monooxygenase CYP71D10p (CYP71D10) mRNA, complete cds.|PLN
AK059923
LOC_Os02g52450
35.1
not assigned.no ontology
NA
0.20
NA
A. thaliana At5g16450 mRNA for S-adenosylmethionine:2-demethylmenaquinone methyltransferase.|PLN
AK061968
LOC_Os02g51080
Q6Z2T6
16.1
secondary metabolism.isoprenoids
NA
0.14
NA
M. crystallinum geranylgeranyl hydrogenase(flavoproteins)
AK064395
LOC_Os09g34250
26.2
misc.UDP glucosyl and glucoronyl transferases
9.51
NA
NA
N. tabacum UDP-glucose:salicylic acid glucosyltransferase (SA-GTase) mRNA
AK064826
LOC_Os08g41990
Q6YZE2
19.3
tetrapyrrole synthesis.GSA
NA
9.82
6.70
Barley glutamate 1-semialdehyde aminotransferase (GSA) mRNA, complete cds.|PLN
AK066522
LOC_Os04g41340
1.2.1
PS.photorespiration.phosphoglycolate phosphatase
NA
0.20
NA
A. thaliana AT5g36790/f5h8_20 mRNA;4-nitrophenylphosphatase-like protein
AK067115
LOC_Os06g10520
18.4.5
Co-factor and vitamine metabolism.pantothenate.pantothenate kinase (PANK)
NA
13.14
NA
A. thaliana putative protein mRNA: Eukaryotic pantothenate kinase
AK067323
LOC_Os03g20700
Q10M50
#N/A
#N/A
NA
0.19
NA
G. max mRNA for magnesium chelatase subunit.|PLN
AK069480
LOC_Os08g06170
16.4.1
secondary metabolism.N misc.alkaloid-like
NA
NA
5.03
(S)-reticuline:oxygen oxidoreductase (methylene-bridge-forming).|PLN
AK072016
LOC_Os04g09604
16.2.1.9
secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT
NA
0.18
0.13
H. vulgare 0-methyltransferase mRNA, partial cds.|PLN
AK072497
LOC_Os01g44050
19.30
tetrapyrrole synthesis.urogen III methylase
17.67
NA
NA
Z.mays mRNA for uroporphyrinogen III methyltransferase, complete cds.|PLN
AK073305
LOC_Os07g01020
Q69LA6
17.5.3
hormone metabolism.ethylene.induced-regulated-responsive-activated
NA
0.20
NA
P. vulgaris putative pyridoxine biosynthetic enzyme (PDX1) mRNA, complete cds.|PLN
AK099527
LOC_Os03g60090
Q75HE6
25
C1-metabolism
NA
16.40
NA
Z. mays methylenetetrahydrofolate reductase mRNA, complete cds.|PLN
AK101454
LOC_Os01g51870
27.3.99
RNA.regulation of transcription.unclassified
NA
9.02
14.93
A. thaliana At5g10830 mRNA, complete cds.|PLN
AK107649
LOC_Os12g42280
Q5MBR3
17.1.1.1.10
hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase
6.19
NA
6.39
Z. mays viviparous-14 (vp14) mRNA, complete cds.|PLN:9-cis-epoxycarotenoid dioxygenase1
AK109673
LOC_Os06g35700
16.4.1
secondary metabolism.N misc.alkaloid-like
NA
24.85
9.74
A. thaliana putative reticuline oxidase-like protein (At1g30700) mRNA, complete cds.|PLN
AK061174
LOC_Os03g62010
35.1
not assigned.no ontology
NA
5.91
6.89
O. sativa harpin induced gene 1 homolog (Hin1) mRNA, complete cds.|PLN
AK067526
LOC_Os08g01220
35.1
not assigned.no ontology
0.19
NA
NA
A. thaliana clone 8166 mRNA, |PLN; Harpin-induced 1 domain
AK068115
LOC_Os01g64470
35.1
not assigned.no ontology
199.31
59.41
35.34
N. tabacum mRNA for hin1, complete cds.|PLN
AK068378
LOC_Os09g27950
#N/A
#N/A
14.21
6.22
NA
N. tabacum mRNA for Avr9 elicitor response protein.|PLN
AK070038
LOC_Os06g09310
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
16.75
NA
NA
N. tabacum Avr9/Cf-9 rapidly elicited protein 132 (ACRE132) mRNA, complete cds.
AK106438
LOC_Os01g62670
35.2
not assigned.unknown
11.42
5.40
NA
N. tabacum Avr9/Cf-9 rapidly elicited protein 137 (ACRE137) mRNA, complete cds.
AK107952
LOC_Os12g06220
35.1
not assigned.no ontology
20.31
NA
NA
O. sativa harpin induced gene 1 homolog (Hin1) mRNA, complete cds.|PLN
AK108084
LOC_Os04g58090
35.1
not assigned.no ontology
NA
28.17
21.66
A. thaliana clone 21639 mRNA;Harpin-induced 1 domain containing protein
AK108457
LOC_Os05g45070
35.2
not assigned.unknown
NA
NA
12.13
A. thaliana hypothetical protein (At2g46150/T3F17.20) mRNA, complete cds.|PLN:HIN1
AK109161
LOC_Os03g13740
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
40.80
21.89
13.44
P. crispum immediate-early fungal elicitor protein CMPG1 (CMPG1) mRNA, complete cds.|PLN
AK058583
LOC_Os10g21670
35.1
not assigned.no ontology
NA
16.63
39.54
A. thaliana clone 15081 mRNA, complete sequence.|PLN
AK058798
LOC_Os06g05880
Q5VMJ3
31.1
cell.organisation
NA
7.70
NA
H. vulgare profilin (Hvpro1) mRNA, complete cds.|PLN: allergens
AK058947
LOC_Os02g31100
35.2
not assigned.unknown
NA
7.10
NA
A. thaliana clone 5392 mRNA; LPS-induced tumor necrosis factor alpha
AK059289
LOC_Os03g62490
35.1
not assigned.no ontology
NA
5.71
NA
Z. mays variety BMS prohibitin (PHB4) mRNA, complete cds.|PLN
AK059893
LOC_Os01g14590
#N/A
#N/A
NA
10.07
8.88
B. fungal pathogen induced mRNA for pathogen-related protein.|PLN
AK060261
LOC_Os02g33820
35.2
not assigned.unknown
NA
7.90
7.68
S. officinarum SoDip22 mRNA for drought inducible 22 kD protein, complete cds.|PLN
AK060806
LOC_Os07g48630
Q8W3L9
17.5.2
hormone metabolism.ethylene.signal transduction
NA
0.14
NA
O. sativa OsEIL2 mRNA for ethylene-insensitive-3-like protein, complete cds.|PLN
AK060902
LOC_Os11g11390
Q0ITS8
29.2.2
protein.synthesis.misc ribosomal protein
NA
10.65
7.34
O.sativa SC34 mRNA for tumor suppressor.|PLN
AK061920
0
#N/A
#N/A
NA
NA
5.73
Rice mRNA EN242, partial sequence.|PLN:Wound-induced basic protein
AK062449
LOC_Os10g41980
35.2
not assigned.unknown
NA
8.60
10.34
O. sativa mRNA for RIR1a protein.|PLN
AK063080
LOC_Os01g62810
31.2
cell.division
NA
0.16
0.20
A. thaliana UVB-resistance protein UVR8 (At5g63860/MGI19_6) mRNA, complete cds.|PLN
AK063198
LOC_Os04g32550
Q0JDK9
20.1
stress.biotic
NA
9.76
5.44
O. sativa DAD-1 mRNA for defender against apoptotic death 1 protein, complete cds.|PLN
AK065824
LOC_Os11g39190
20.1
stress.biotic
0.20
NA
NA
H. vulgare Mla1 (Mla1) mRNA.|PLN; Disease resistance protein family protein
AK065988
LOC_Os01g42410
Q8GU89
34.16
transport.ABC transporters and multidrug resistance systems
NA
6.82
NA
N. tabacum NtPDR1 mRNA for pleiotropic drug resistance like protein, complete cds.|PLN
AK066624
LOC_Os12g38170
20.1
stress.biotic
7.24
NA
NA
A. thaliana clone 2058 mRNA; Thaumatin, pathogenesis-related family protein
AK071482
LOC_Os08g38900
Q9XGP7
16.2.1.6
secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT
12.15
14.51
6.96
P. tremuloides caffeoyl-CoA 3-O-methyltransferase mRNA, complete cds.|PLN
AK071484
LOC_Os04g15920
Q7XWU3
16.2.1.10
secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD
5.80
NA
NA
A. thaliana 34593 mRNA; Cinnamyl-alcohol dehydrogenase CAD1 (Putative alcohol dehydrogenase)
AK072872
LOC_Os08g34280
16.8.3
secondary metabolism.flavonoids.dihydroflavonols
NA
25.82
16.73
L. perenne cinnamoyl-CoA reductase (CCR1) mRNA, complete cds.|PLN
AK103094
LOC_Os11g42200
Q2R0L2
16.10
secondary metabolism.simple phenols
NA
65.11
53.80
L. perenne laccase LAC2-1 mRNA, complete cds.|PLN
AK105011
LOC_Os02g09490
Q6ZHS4
16.2.1.10
secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD
NA
12.65
7.39
F. arundinacea cinnamyl alcohol dehydrogenase 1b mRNA, complete cds.|PLN
AK105636
LOC_Os02g46970
Q42982
16.2.1.3
secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL
NA
0.16
NA
O. sativa 4-coumarate:CoA ligase isoform 2 (4cl.2) mRNA, complete cds.|PLN
AK109431
LOC_Os01g63190
Q5N7B4
16.10
secondary metabolism.simple phenols
0.13
0.20
NA
L. perenne laccase LAC5-4 mRNA, complete cds.|PLN
AK061337
LOC_Os04g49194
17.5.1
hormone metabolism.ethylene.synthesis-degradation
NA
10.18
19.75
A. thaliana flavanone 3-hydroxylase-like protein (At5g24530) mRNA, complete cds.|PLN
AK061357
LOC_Os10g39140
Q8W2X5
16.8.3
secondary metabolism.flavonoids.dihydroflavonols
8.77
11.65
7.84
A. thaliana flavanone 3-hydroxylase-like protein (At5g24530) mRNA, complete cds.|PLN
AK064755
LOC_Os04g09260
16.2
secondary metabolism.phenylpropanoids
NA
20.69
6.89
N. tabacum mRNA for HSR201 protein.|PLN
AK064768
LOC_Os08g06100
Q6ZD89
16.2.1.9
secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT
NA
14.06
8.38
S. officinarum mRNA for caffeic acid 3-O-methyltransferase.|PLN (Quercetin 3-O-methyltransferase 1)
AK068438
LOC_Os03g03034
16.8.4
secondary metabolism.flavonoids.flavonols
NA
NA
5.19
A. thaliana flavanone 3-hydroxylase-like protein (At5g24530) mRNA, complete cds.|PLN
AK070381
LOC_Os08g02030
16.2
secondary metabolism.phenylpropanoids
NA
20.65
12.23
A. thaliana putative anthranilate N-hydroxycinnamoyl/benzoyltransferase mRNA, complete cds.|PLN
AK072106
LOC_Os08g43040
16.2.1.4
secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT
NA
NA
6.04
A. thaliana clone 114130 mRNA, cds.|PLN: anthranilate N-hydroxycinamoyl/benzoyltransferase
AK072528
#N/A
#N/A
#N/A
NA
5.75
NA
A. thaliana clone 114130 mRNA: Hydroxyanthranilate hydroxycinnamoyltransferase 3
AK100853
LOC_Os04g49210
17.5.1
hormone metabolism.ethylene.synthesis-degradation
NA
37.79
20.64
A. thaliana flavanone 3-hydroxylase-like protein (At5g24530) mRNA, complete cds.|PLN
AK103772
LOC_Os10g02390
3.5
minor CHO metabolism.others
NA
7.97
NA
P. somniferum putative NADPH-dependent oxidoreductase mRNA, cor2-1 allele, complete cds.|PLN
AK108048
LOC_Os04g37490
3.5
minor CHO metabolism.others
55.75
27.02
14.47
P. somniferum putative NADPH-dependent oxidoreductase mRNA, cor2-1 allele, complete cds.|PLN
AK108398
LOC_Os04g08550
3.5
minor CHO metabolism.others
NA
10.69
9.32
S. rostrata mRNA for putative chalcone reductase.|PLN
AK109553
LOC_Os07g36560
16.2
secondary metabolism.phenylpropanoids
10.69
5.23
NA
N. tabacum benzoyl coenzyme A: benzyl alcohol benzoyl transferase mRNA, complete cds.|PLN
AK061800
LOC_Os07g36190
16.1.2.7
secondary metabolism.isoprenoids.mevalonate pathway.isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase
NA
0.13
NA
O. sativa clone rice isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase mRNA,.|PLN
AK065320
#N/A
#N/A
#N/A
6.62
6.82
NA
A. thaliana AT4g38220/F20D10_340 mRNA:
AK068310
LOC_Os02g36140
Q0E088
17.6.1.2
hormone metabolism.gibberelin.synthesis-degradation.ent-kaurene synthase
NA
34.96
14.36
O. sativa OsDTC1 mRNA for putative diterpene cyclase, complete cds.|PLN
AK069429
LOC_Os06g02019
Q5VRM7
26.10
misc.cytochrome P450
NA
0.16
NA
Z. mays DWARF3 mRNA: Ent-kaurenoic acid oxidase 2 (AtKAO2)
AK069868
LOC_Os05g04584
35.1
not assigned.no ontology
NA
NA
6.63
M. acuminata putative 0-deacetylbaccatin III-10-O-acetyl transferase-like mRNA, partial cds.|PLN
AK072461
LOC_Os12g30824
Q2QQJ5
16.1.5
secondary metabolism.isoprenoids.terpenoids
NA
45.94
28.07
O. sativa OsDTC1 mRNA for putative diterpene cyclase, complete cds.|PLN
AK072928
LOC_Os02g36210
Q6Z5I0
17.6.1.1
hormone metabolism.gibberelin.synthesis-degradation.copalyl diphosphate synthase
NA
18.08
14.32
S. dulcis cps mRNA for copalyl diphosphate, complete cds.|PLN
AK073290
LOC_Os12g43130
Q2QLV9
16.1.4.1
secondary metabolism.isoprenoids.carotenoids.phytoene synthase
NA
0.09
NA
O. sativa phytoene synthase mRNA, partial cds.|PLN
AK102123
LOC_Os06g07120
35.1
not assigned.no ontology
NA
0.15
NA
P. sepium P.s.cisPT mRNA for cis-prenyltransferase, complete cds.|PLN
AK105659
LOC_Os07g33440
26.10
misc.cytochrome P450
NA
6.00
NA
T. cuspidata taxane 13-alpha-hydroxylase mRNA, complete cds.|PLN
AK108761
LOC_Os08g07100
16.1.5
secondary metabolism.isoprenoids.terpenoids
NA
6.26
9.57
G. arboreum (+)-delta-cadinene synthase isozyme XC14 mRNA, complete cds.|PLN
AK059089
LOC_Os06g19070
26.10
misc.cytochrome P450
NA
10.76
NA
A. thaliana putative cytochrome P450 (At2g45570) mRNA, complete cds.|PLN
AK063764
LOC_Os01g43750
26.10
misc.cytochrome P450
NA
6.14
NA
O. sativa CL-8904 mRNA for cytochrome P450, complete cds.|PLN
AK064287
LOC_Os12g05440
26.10
misc.cytochrome P450
9.65
6.63
NA
A. thaliana At2g27690/F15K20.21 mRNA; Cytochrome P450 family protein
AK065971
LOC_Os07g11739
26.10
misc.cytochrome P450
NA
39.19
32.01
T. aestivum N-1 mRNA for cytochrome P450, complete cds.|PLN
AK066760
LOC_Os03g55240
26.10
misc.cytochrome P450
NA
9.10
11.93
L. rigidum clone FHH-t putative cytochrome P450 mRNA, complete cds.|PLN
AK067458
LOC_Os10g05020
26.10
misc.cytochrome P450
NA
13.39
5.02
A. thaliana putative cytochrome p450 protein (At1g64950) mRNA, complete cds.|PLN
AK067905
LOC_Os08g39694
26.10
misc.cytochrome P450
0.20
NA
NA
O. sativa Cyt-P450 monooxygenase (PM-II) mRNA, complete cds.|PLN
AK068907
LOC_Os02g09250
26.10
misc.cytochrome P450
NA
NA
6.32
G.max mRNA for putative cytochrome P450, clone CP7.|PLN
AK069017
LOC_Os03g39760
26.10
misc.cytochrome P450
NA
0.12
NA
T. aestivum N-1 mRNA for cytochrome P450, complete cds.|PLN
AK069494
LOC_Os01g38110
26.10
misc.cytochrome P450
NA
24.41
20.08
O. sativa Cyt-P450 monooxygenase (PM-II) mRNA, complete cds.|PLN
AK070167
LOC_Os02g36190
Q6YV88
26.10
misc.cytochrome P450
NA
25.55
22.31
T. aestivum N-1 mRNA for cytochrome P450, complete cds.|PLN
AK071546
LOC_Os04g10160
Q7X7X4
26.10
misc.cytochrome P450
NA
31.12
9.85
L. rigidum clone Lol-5-v putative cytochrome P450 mRNA, complete cds.|PLN
AK071599
LOC_Os12g16720
Q2QUC5
26.10
misc.cytochrome P450
NA
92.03
65.80
Avocado cytochrome P-450LXXIA1 (cyp71A1) mRNA, complete cds.|PLN
AK073238
LOC_Os01g52790
26.10
misc.cytochrome P450
NA
7.16
NA
L. rigidum clone Lol-79 putative cytochrome P450 mRNA, complete cds.|PLN
AK099695
LOC_Os05g41440
26.10
misc.cytochrome P450
NA
5.25
NA
S. bicolor cytochrome P450 CYP98A1 (CYP98A1) mRNA, complete cds.|PLN
AK102040
LOC_Os08g39730
26.10
misc.cytochrome P450
NA
10.56
6.88
O. sativa Cyt-P450 monooxygenase (PM-II) mRNA, complete cds.|PLN
AK111513
#N/A
#N/A
#N/A
NA
0.20
NA
Gene for omega3-linoleic acid desaturase localized in microsome.|PAT
AK112050
LOC_Os04g30760
11.1.4
lipid metabolism.FA synthesis and FA elongation.ACP oxoacyl reductase
NA
11.02
7.38
C. lanceolata mRNA for beta-ketoacyl-ACP reductase.|PLN
AK060559
#N/A
#N/A
#N/A
NA
0.14
NA
Citrus unshiu beta-carotene hydroxylase (CHX2) mRNA, complete cds.|PLN
AK061527
LOC_Os02g32970
35.1
not assigned.no ontology
NA
10.80
5.10
A. thaliana clone 31039 mRNA: Alpha/beta hydrolase fold domain containing protein
AK061856
LOC_Os07g46852
26.22
misc.short chain dehydrogenase/reductase (SDR)
0.2
NA
NA
A. thaliana At3g26770/MDJ14_21 mRNA; Short-chain dehydrogenase/reductase SDR family
AK065319
LOC_Os01g26039
35.1
not assigned.no ontology
NA
0.09
NA
A. thaliana clone 25383 mRNA; Esterase/lipase/thioesterase domain containing protein
AK065466
LOC_Os01g25990
35.1
not assigned.no ontology
NA
0.17
NA
A. thaliana clone 25383 mRNA; Esterase/lipase/thioesterase domain containing protein
AK066638
#N/A
#N/A
#N/A
NA
0.14
NA
A. thaliana At1g45200 mRNA; Lipase, class 3 family protein
AK066814
LOC_Os01g41240
35.1
not assigned.no ontology
6.44
10.34
14.15
A. thaliana clone 6052 mRNA; Alpha/beta hydrolase fold domain containing protein
AK066939
LOC_Os10g04620
35.1
not assigned.no ontology
NA
12.44
6.06
A. thaliana putative lipase (At5g16120) mRNA, complete cds.|PLN
AK069768
LOC_Os02g57260
11.9.4.5
lipid metabolism.lipid degradation.beta-oxidation.acyl-CoA thioesterase
NA
9.31
8.00
O. sativa 3-ketoacyl-CoA thiolase mRNA, partial cds.|PLN
AK069956
LOC_Os02g42810
26.22
misc.short chain dehydrogenase/reductase (SDR)
NA
0.17
NA
A. thaliana clone U10011 putative carbonyl reductase (At1g01800) mRNA
AK071549
#N/A
#N/A
#N/A
NA
5.08
NA
A. thaliana At3g29770 mRNA; Alpha/beta hydrolase family protein
AK071972
LOC_Os11g07930
26.22
misc.short chain dehydrogenase/reductase (SDR)
NA
21.09
12.64
A. thaliana putative protein (At5g02540) mRNA, complete cds.|PLN
AK072460
LOC_Os10g31950
11.9.4.5
lipid metabolism.lipid degradation.beta-oxidation.acyl-CoA thioesterase
7.52
12.06
6.94
A. thaliana clone 36488 mRNA, complete sequence.|PLN
AK073079
LOC_Os06g15990
5.10
fermentation.aldehyde dehydrogenase
NA
10.33
5.37
O. sativa mRNA for aldehyde dehydrogenase ALDH2b, complete cds.|PLN
AK073294
LOC_Os02g17390
Q8W1L6
11.9.4.9
lipid metabolism.lipid degradation.beta-oxidation.multifunctional
NA
11.09
7.32
O. sativa peroxisomal multifunctional protein mRNA, complete cds.|PLN
AK100592
LOC_Os12g26290
20.2
stress.abiotic
NA
34.54
12.34
O. sativa fatty acid alpha-oxidase mRNA, complete cds.|PLN
AK100767
LOC_Os03g18740
26.22
misc.short chain dehydrogenase/reductase (SDR)
8.96
NA
NA
Z. mays alcohol dehydrogenase (tasselseed 2) mRNA, complete cds.|PLN
AK101141
#N/A
#N/A
#N/A
NA
5.12
NA
M. musculus mRNA for mitochondrial acyl-CoA thioesterase, clone 1.|ROD
AK104740
LOC_Os01g11650
26.28
misc.GDSL-motif lipase
NA
19.55
7.76
H. sapiens, clone MGC:35476 IMAGE:5195029 GDSL-motif lipase/hydrolase-like protein
AK104746
LOC_Os11g08300
5.10
fermentation.aldehyde dehydrogenase
NA
9.55
NA
A. thaliana mRNA for aldehyde dehydrogenase (ALDH3 gene).|PLN
AK106721
LOC_Os12g43970
26.1
misc.misc2
NA
9.73
NA
A. thaliana AT3g51000/F24M12_40: Epoxide hydrolase family protein
AK108245
LOC_Os10g25400
26.28
misc.GDSL-motif lipase
NA
6.83
NA
A. thaliana At1g28600/F1K23_6 mRNA; Lipolytic enzyme (lipase)
AK109382
LOC_Os04g41960
26.7
misc.oxidases - copper, flavone etc.
30.82
NA
NA
N. tabacum NtADH mRNA for allyl alcohol dehydrogenase
AK109504
LOC_Os03g12260
26.10
misc.cytochrome P450
NA
NA
5.30
N. tabacum cytochrome P450-dependent fatty acid hydroxylase mRNA, complete cds.|PLN
AK061212
LOC_Os06g11210
Q69TI0
17.7.1.5
hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase
6.76
NA
NA
O. sativa RRJ4 mRNA for 12-oxophytodienoic acid reductase, complete cds.|PLN
AK066138
LOC_Os03g12500
Q7XYS3
17.7.1.3
hormone metabolism.jasmonate.synthesis-degradation.allene oxidase synthase
NA
59.45
19.92
O. sativa allene oxide synthase (AOS) mRNA, complete cds.|PLN
AK066825
LOC_Os08g39850
Q84YK8
17.7.1.2
hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase
15.47
51.57
26.65
O. sativa lipoxygenase (CM-LOX2) mRNA, partial cds.|PLN
AK068620
LOC_Os03g55800
Q7Y0C8
17.7.1.3
hormone metabolism.jasmonate.synthesis-degradation.allene oxidase synthase
10.61
NA
NA
S. tuberosum partial mRNA for allene oxide synthase (aos1 gene).|PLN
AK071121
LOC_Os03g49380
Q53RB0
17.7.1.2
hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase
12.19
NA
NA
H. vulgare lipoxygenase (LoxB) mRNA, complete cds.|PLN
AK071915
LOC_Os02g10120
17.7.1.2
hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase
NA
0.04
NA
H. vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene).|PLN
AK105590
LOC_Os06g11240
Q69TH8
17.7.1.5
hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase
7.80
NA
NA
O. sativa RRJ4 mRNA for 12-oxophytodienoic acid reductase, complete cds.|PLN
AK108651
LOC_Os01g50610
17.8.1
hormone metabolism.salicylic acid.synthesis-degradation
5.08
NA
NA
A. majus S-adenosyl-L-methionine:jasmonic acid methyltransferase (SAMT) mRNA
AK066288
LOC_Os02g37654
11.8.10
lipid metabolism.'exotics' (steroids, squalene etc).phosphatidylcholinesterol O-acyltransferase
NA
0.18
NA
A. thaliana At1g27480/F17L21_28 mRNA: Lecithin:cholesterol acyltransferase family protein
AK071679
LOC_Os03g52010
11.8.10
lipid metabolism.'exotics' (steroids, squalene etc).phosphatidylcholinesterol O-acyltransferase
NA
0.19
NA
A. thaliana At1g27480/F17L21_28 mRNA: Lecithin:cholesterol acyltransferase family protein
AK100029
LOC_Os06g21820
17.8.1
hormone metabolism.salicylic acid.synthesis-degradation
NA
27.87
8.88
A. thaliana clone 37493 mRNA, complete sequence.|PLN
AK100199
LOC_Os02g26650
17.3.1.2.7
hormone metabolism.brassinosteroid.synthesis-degradation.sterols.DWF5
NA
5.19
5.32
A. thaliana sterol delta7 reductase (At1g50430) mRNA, complete cds.|PLN
AK100909
LOC_Os07g09190
Q6YU51
16.1.1.1
secondary metabolism.isoprenoids.non-mevalonate pathway.DXS
NA
9.70
5.39
C. roseus mRNA for 1-deoxyxylulose 5-phosphate synthase.|PLN
AK060705
LOC_Os02g39850
Q6K638
16.2.1.4
secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT
NA
12.76
5.24
N. tabacum mRNA for hydroxycinnamoyl transferase (hct gene).|PLN
AK061327
LOC_Os11g42370
Q2R0J4
16.2.1.4
secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT
NA
14.65
NA
I. batatas hcbt mRNA for N-hydroxycinnamoyl/benzoyltransferase, complete cds.|PLN
AK067847
LOC_Os10g36848
26.10
misc.cytochrome P450
NA
50.19
15.56
A. thaliana ferulate-5-hydroxylase (FAH1) mRNA, complete cds.|PLN
AK068648
#N/A
#N/A
#N/A
NA
0.12
NA
A. thaliana putative cinnamoyl-CoA reductase (At2g33590) mRNA, complete cds.|PLN
AK069960
LOC_Os04g01470
Q7XXI9
16.2.1.9
secondary metabolism.phenylpropanoids.lignin biosynthesis.COMT
NA
52.77
25.56
F. arundinacea comt3 caffeic acid O-methyltransferase mRNA, complete cds.|PLN
AK070746
LOC_Os02g08420
16.8.3
secondary metabolism.flavonoids.dihydroflavonols
26.27
5.13
NA
Z. mays mRNA for cinnamoyl-CoA reductase.|PLN
AK064938
#N/A
#N/A
#N/A
NA
6.18
NA
A. thaliana At1g34060/F12G12_150 mRNA;
AK065673
LOC_Os02g24020
Q67W29
13.1.3.5.2
amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase
NA
5.89
6.37
A. thaliana clone 10293 mRNA, complete sequence.|PLN
AK068391
LOC_Os09g12290
13.1.3.6.1.1
amino acid metabolism.synthesis.aspartate family.misc.homoserine.aspartate kinase
NA
0.12
NA
Rice mRNA for aspartate kinase-homoserine dehydrogenase, complete cds.|PLN
AK069392
LOC_Os09g20284
Q0J290
22.2.1
polyamine metabolism.degradation.polyamin oxidase
NA
23.73
7.95
Z. mays mRNA for flavin containing polyamine oxidase (PAO).|PLN
AK071066
LOC_Os12g13320
13.1.2.3.22
amino acid metabolism.synthesis.glutamate family.arginine.arginosuccinate synthase
NA
6.50
NA
A. thaliana putative argininosuccinate synthase (At4g24830) mRNA, complete cds.|PLN
AK071801
#N/A
#N/A
#N/A
NA
9.75
NA
C. familiaris flavin-containing monooxygenase 1 mRNA, complete cds.|MAM
AK099445
LOC_Os03g44150
Q10G56
19.3
tetrapyrrole synthesis.GSA
NA
6.46
7.25
V. vinifera ornithine aminotransferase mRNA, complete cds.|PLN
AK059771
LOC_Os02g41590
23.3.2.1
nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase
NA
32.29
21.90
O. sativa OsAK mRNA for adenosine kinase, complete cds.|PLN
AK065219
LOC_Os08g23730
23.1.2.31
nucleotide metabolism.synthesis.purine.GMP synthetase
NA
6.67
5.95
B. subtilis GMP synthetase (guaA) mRNA, complete cds.|BCT
AK065933
#N/A
#N/A
#N/A
NA
7.58
6.13
O. sativa mRNA for nucleoside diphosphate kinase, complete cds.|PLN
AK066881
LOC_Os03g07840
Q10R17
23.1.2.20
nucleotide metabolism.synthesis.purine.adenylosuccinate synthase
NA
7.04
NA
T. aestivum adenylosuccinate synthetase mRNA, partial cds.|PLN
AK069870
LOC_Os12g13380
Q08479
23.4.1
nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase
NA
8.97
NA
O. sativa mRNA for adenylate kinase-a, complete cds.|PLN
AK070411
#N/A
#N/A
#N/A
9.70
NA
NA
A. thaliana CTP-synthetase, putative (At3g12670) mRNA, complete cds.|PLN