top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: ​ 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

​

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma02g04120.1
AT1G10670
Q9SGY2
8.2.11
TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase
0.76
ATP-CITRATE LYASE
Glyma09g04000.2
#N/A
#N/A
#N/A
#N/A
-1.19
ATP-CITRATE LYASE
Glyma15g15010.1
AT5G49460
Q9FGX1
8.2.11
TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase
-1.22
ATP-CITRATE LYASE
Glyma08g17450.1
AT1G79440
Q9SAK4
16.4.2
secondary metabolism.N misc.betaine
0.85
Misc. organic acid transformatons
Glyma01g03720.3
AT5G14740
P42737
8.3
TCA / org. transformation.carbonic anhydrases
-0.82
CARBONIC ANHYDRASE
Glyma02g37710.1
AT4G33580
Q94CE3
8.3
TCA / org. transformation.carbonic anhydrases
1.04
CARBONIC ANHYDRASE
Glyma02g37710.2
AT4G33580
Q94CE3
8.3
TCA / org. transformation.carbonic anhydrases
1.66
CARBONIC ANHYDRASE
Glyma06g19400.1
AT5G14740
P42737
8.3
TCA / org. transformation.carbonic anhydrases
1.63
CARBONIC ANHYDRASE
Glyma05g33470.1
AT4G39830
A0A1P8B4N7
21.2.1
redox.ascorbate and glutathione.ascorbate
2.93
ASCORBATE OXIDASE [cell wall]
Glyma13g03650.1
AT5G21105
F4K6Z6
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.31
ASCORBATE OXIDASE [cell wall]
Glyma20g12150.1
AT5G21105
F4K6Z6
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.99
ASCORBATE OXIDASE [cell wall]
Glyma11g15680.5
AT1G07890
Q05431
21.2.1
redox.ascorbate and glutathione.ascorbate
-0.26
ASCORBATE PEROXIDASE 1 [cytoplasm]
bottom of page