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Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: ​ 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

​

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma15g15310.1
AT3G16950
A8MS68
8.1.1.3
TCA / org. transformation.TCA.pyruvate DH.E3
-1
PYRUVATE DEHYDROGENASE [E3]
Glyma17g03560.1
AT3G16950
A8MS68
8.1.1.3
TCA / org. transformation.TCA.pyruvate DH.E3
-0.71
PYRUVATE DEHYDROGENASE [E3]
Glyma12g10580.1
AT2G05710
Q9SIB9
8.1.3
TCA / org. transformation.TCA.aconitase
0.57
ACONITASE
Glyma13g38480.1
AT2G05710
Q9SIB9
8.1.3
TCA / org. transformation.TCA.aconitase
0.72
ACONITASE
Glyma20g34160.1
AT4G13430
Q94AR8
8.2.3
TCA / org. transformation.other organic acid transformaitons.aconitase
1.29
ACONITASE
Glyma10g43610.2
#N/A
#N/A
#N/A
#N/A
2.39
2-OXOGLUTARATE DEHYDROGENASE
Glyma10g02040.3
#N/A
#N/A
#N/A
#N/A
1.01
FUMARASE
Glyma01g01180.1
AT1G79750
Q9CA83
8.2.10
TCA / org. transformation.other organic acid transformaitons.malic
0.96
MALATE OXIDOREDUCTASE
Glyma08g21530.1
AT1G79750
Q9CA83
8.2.10
TCA / org. transformation.other organic acid transformaitons.malic
-1.01
MALATE OXIDOREDUCTASE
Glyma16g08460.1
AT1G79750
Q9CA83
8.2.10
TCA / org. transformation.other organic acid transformaitons.malic
0.49
MALATE OXIDOREDUCTASE
Glyma18g46340.1
AT4G00570
Q8L7K9
8.2.10
TCA / org. transformation.other organic acid transformaitons.malic
0.84
MALATE OXIDOREDUCTASE
Glyma01g03530.1
AT1G10670
Q9SGY2
8.2.11
TCA / org. transformation.other organic acid transformaitons.atp-citrate lyase
0.57
ATP-CITRATE LYASE
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