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Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: ​ 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

​

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma08g21370.1
AT4G26270
Q94AA4
4.4
glycolysis.PPFK
-0.82
PHOSPHOFRUCTOKINASE [plastid]
Glyma09g23150.1
AT5G52920
Q9FLW9
11.1.30
lipid metabolism.FA synthesis and FA elongation.pyruvate kinase
-0.69
PYRUVATE KINASE [plastid]
Glyma16g28980.1
AT5G52920
Q9FLW9
11.1.30
lipid metabolism.FA synthesis and FA elongation.pyruvate kinase
-4.43
PYRUVATE KINASE [plastid]
Glyma11g19400.1
AT5G22620
Q9FNJ9
35.2
not assigned.unknown
-0.99
PHOSPHOGLYCERATE MUTASE [localization unclear]
Glyma12g09100.1
AT5G22620
Q9FNJ9
35.2
not assigned.unknown
-0.54
PHOSPHOGLYCERATE MUTASE [localization unclear]
Glyma13g01970.1
AT1G22170
Q9LM13
4.11
glycolysis.phosphoglycerate mutase
-5.87
PHOSPHOGLYCERATE MUTASE [localization unclear]
Glyma20g37486.1
#N/A
#N/A
#N/A
#N/A
1.19
PHOSPHOGLYCERATE MUTASE [localization unclear]
Glyma05g27260.1
AT1G30120
Q9C6Z3
11.1.31
lipid metabolism.FA synthesis and FA elongation.pyruvate DH
-0.83
PYRUVATE DEHYDROGENASE [E1]
Glyma14g10550.1
AT1G30120
Q9C6Z3
11.1.31
lipid metabolism.FA synthesis and FA elongation.pyruvate DH
-0.67
PYRUVATE DEHYDROGENASE [E1]
Glyma01g20720.1
AT3G25860
Q9SQI8
8.1.1.2
TCA / org. transformation.TCA.pyruvate DH.E2
-3.93
PYRUVATE DEHYDROGENASE [E2]
Glyma07g37540.1
AT3G06850
Q9M7Z1
13.2.4.1
amino acid metabolism.degradation.branched-chain group.shared
0.71
PYRUVATE DEHYDROGENASE [E2]
Glyma07g37050.2
AT3G16950
A8MS68
8.1.1.3
TCA / org. transformation.TCA.pyruvate DH.E3
-1.89
PYRUVATE DEHYDROGENASE [E3]
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