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Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: ​ 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

​

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma09g01050.1
AT1G12000
Q8W4M5
4.5
glycolysis.pyrophosphate-fructose-6-P phosphotransferase
-1.35
PHOSPHOFRUCTOKINASE [cytoplasm]
Glyma15g11890.1
AT1G12000
Q8W4M5
4.5
glycolysis.pyrophosphate-fructose-6-P phosphotransferase
-1.48
PHOSPHOFRUCTOKINASE [cytoplasm]
Glyma03g22790.1
AT1G16300
Q5E924
4.9
glycolysis.glyceraldehyde 3-phosphate dehydrogenase
-1.07
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [cytoplasm]
Glyma11g37360.1
AT3G04120
P25858
4.9
glycolysis.glyceraldehyde 3-phosphate dehydrogenase
0.66
GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [cytoplasm]
Glyma20g37486.1
#N/A
#N/A
#N/A
#N/A
1.19
PHOSPHOGLYCERATE MUTASE [cytoplasm]
Glyma18g22780.1
AT1G74030
Q9C9C4
4.12
glycolysis.enolase
0.72
ENOLASE [cytoplasm]
Glyma06g33380.1
AT3G14940
Q84VW9
4.14
glycolysis.PEPCase
-0.73
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
Glyma12g33820.1
AT3G14940
Q84VW9
4.14
glycolysis.PEPCase
-0.58
PHOSPHO-ENOL-PYRUVATE CARBOXYLASE [cytoplasm]
Glyma20g02220.1
AT1G70820
Q9SSL0
4.2
glycolysis.PGM
-0.59
PHOSPHOGLUCOMUTASE [plastid]
Glyma02g37590.1
AT4G24620
Q8H103
4.3
glycolysis.G6PIsomerase
-0.47
GLUCOSE-6-PHOSPHATE ISOMERASE [cytoplasm]
Glyma01g03040.1
AT2G22480
Q8VYN6
4.4
glycolysis.PPFK
1.84
PHOSPHOFRUCTOKINASE [plastid]
Glyma08g03570.1
AT4G26270
Q94AA4
4.4
glycolysis.PPFK
0.87
PHOSPHOFRUCTOKINASE [plastid]
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