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Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: ​ 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

​

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma19g01390.1
AT1G23800
Q8S528
5.10
fermentation.aldehyde dehydrogenase
1.01
Fermentation: ALDEHYDE DEHYDROGENASE
Glyma02g45790.1
AT2G42790
Q9SJH7
6.1
gluconeogenese/ glyoxylate cycle.citrate synthase
0.58
Gluconeogenesis / glyoxylate cycle: CITRATE SYNTHASE
Glyma17g13730.1
AT5G03860
Q9LZC3
6.2
gluconeogenese/ glyoxylate cycle.malate synthase
1.21
Gluconeogenesis / glyoxylate cycle: CITRATE SYNTHASE
Glyma11g04720.1
AT2G22780
O82399
6.3
gluconeogenesis.Malate DH
0.56
Gluconeogenesis / glyoxylate cycle: MALATE DEHYDROGENASE
Glyma01g02330.1
AT4G37870
Q9T074
6.4
gluconeogenese/ glyoxylate cycle.PEPCK
-0.55
Gluconeogenesis / glyoxylate cycle: PEPCK
Glyma04g09510.1
AT4G37870
Q9T074
6.4
gluconeogenese/ glyoxylate cycle.PEPCK
0.86
Gluconeogenesis / glyoxylate cycle: PEPCK
Glyma11g35990.2
#N/A
#N/A
#N/A
#N/A
1.04
?-GLUTAMYL TRANSPEPTIDASE
Glyma18g02450.1
AT4G39640
Q8VYW6
21.2.2
redox.ascorbate and glutathione.glutathione
-0.9
?-GLUTAMYL TRANSPEPTIDASE
Glyma08g01750.3
#N/A
#N/A
#N/A
#N/A
0.02
GLUTAMATE-CYSTEINE LIGASE
Glyma03g40050.1
AT5G27380
P46416
21.2.2
redox.ascorbate and glutathione.glutathione
-0.41
GLUTATHIONE SYNTHETASE
Glyma19g42600.1
AT5G27380
P46416
21.2.2
redox.ascorbate and glutathione.glutathione
0.03
GLUTATHIONE SYNTHETASE
Glyma06g03560.2
#N/A
#N/A
#N/A
#N/A
0.48
GLUCOSE-6-PHOSPHATE ISOMERASE [cytoplasm]
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