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Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: ​ 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

​

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma04g14800.1
AT3G22370
Q39219
9.4
mitochondrial electron transport / ATP synthesis.alternative oxidase
0.71
ALTERNATIVE OXIDASE
Glyma03g23306.1
#N/A
#N/A
#N/A
#N/A
-1.03
CYTOCHROME C OXIDASE
Glyma12g36106.1
#N/A
#N/A
#N/A
#N/A
-1.02
ATPase
Glyma17g23821.1
#N/A
#N/A
#N/A
#N/A
-0.9
ATPase
Glyma2269s00200.1
ATMG00480
#N/A
9.9
mitochondrial electron transport / ATP synthesis.F1-ATPase
-0.79
ATPase
Glyma05g04520.2
#N/A
#N/A
#N/A
#N/A
1.21
Fermentation: LACTATE DEHYDROGENASE
Glyma09g08150.1
AT1G54100
Q9SYG7
5.1
fermentation.LDH
0.53
Fermentation: LACTATE DEHYDROGENASE
Glyma07g18570.1
AT4G33070
O82647
5.2
fermentation.PDC
-0.79
Fermentation: PYRUVATE DECARBOXYLASE
Glyma08g18830.1
AT4G33070
O82647
5.2
fermentation.PDC
-7.35
Fermentation: PYRUVATE DECARBOXYLASE
Glyma13g30490.1
AT5G54960
Q9FFT4
5.2
fermentation.PDC
-1.65
Fermentation: PYRUVATE DECARBOXYLASE
Glyma14g38860.1
AT5G17380
Q9LF46
13.1.4.1
amino acid metabolism.synthesis.branched chain group.common
0.8
Fermentation: PYRUVATE DECARBOXYLASE
Glyma18g43460.1
AT4G33070
O82647
5.2
fermentation.PDC
-0.6
Fermentation: PYRUVATE DECARBOXYLASE
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