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Species & Dataset

Experiment

Foliar Ozone Injury

  • Glycine max

  • Common name: Soybean

  • Family: Fabaceae

  • Cultivar: Glycine max L.

  • Tissue: Third trifoliate

  • Ozone concentration: Ambient ozone (12.5 nL L−1)                   Elevated ozone (151.2 nL L−1 ± 0.72 nL L−1)

  • Ozone exposure: Throughout the  experiment (8 hours/day)

  • Sampling time: 11-13 days after planting

  • Platform: Hiseq 2000 (Illumina)

  • Year of study: 2015

  • Location: Urbana, USA

Glycine INJURY.jpeg

Title: A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops

 

Summary: Current concentrations of tropospheric ozone ([O3]) pollution negatively impact plant metabolism, which can result in decreased crop yields. Interspecific variation in the physiological response of plants to elevated [O3] exists; however, the underlying cellular responses explaining species-specific differences are largely unknown. Here, a physiological screen has been performed on multiple varieties of legume species. Three varieties of garden pea (Pisum sativum L.) were resilient to elevated [O3]. Garden pea showed no change in photosynthetic capacity or leaf longevity when exposed to elevated [O3], in contrast to varieties of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.). Global transcriptomic and targeted biochemical analyses were then done to examine the mechanistic differences in legume responses to elevated [O3]. In all three species, there was an O3-mediated reduction in specific leaf weight and total non-structural carbohydrate content, as well as increased abundance of respiration-related transcripts. Differences specific to garden pea included a pronounced increase in the abundance of GLUTATHIONE REDUCTASE transcript, as well as greater contents of foliar glutathione, apoplastic ascorbate, and sucrose in elevated [O3]. These results suggest that garden pea may have had greater capacity for detoxification, which prevented net losses in CO2 fixation in an elevated [O3] environment.

 

Data repository: NCBI [GenBank: SRP009826]

Reference: Yendrek, C.R., Koester, R.P. and Ainsworth, E.A., 2015. A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of experimental botany, 66(22), pp.7101-7112.

Gene Identifier
AGI Gene Code
Uniprot ID
Bin Code
Bin Name
log2FC
Gene Annotation
Glyma09g33650.1
AT4G37870
Q9T074
6.4
gluconeogenese/ glyoxylate cycle.PEPCK
0.63
Gluconeogenesis / glyoxylate cycle: PEPCK
Glyma07g38390.2
AT4G15530
O23404
6.5
gluconeogenese/ glyoxylate cycle.pyruvate dikinase
-0.62
Gluconeogenesis / glyoxylate cycle: PYRUVATE DIKINASE
Glyma18g53700.1
AT5G13420
Q9LYR4
7.2.2
OPP.non-reductive PP.transaldolase
0.74
Pentose phosphate pathway, non-reductive: TRANSALDOLASE
Glyma19g43310.1
AT3G04790
Q9S726
7.2.4
OPP.non-reductive PP.ribose 5-phosphate isomerase
0.83
Pentose phosphate pathway, non-reductive: RIBOSE 5-PHOSPHATE ISOMERASE
Glyma08g39510.2
AT5G14740
P42737
8.3
TCA / org. transformation.carbonic anhydrases
0.86
CARBONIC ANHYDRASE
Glyma19g01050.1
AT3G01500
P27140
8.3
TCA / org. transformation.carbonic anhydrases
-1.21
CARBONIC ANHYDRASE
Glyma19g01050.10
#N/A
#N/A
#N/A
#N/A
-0.84
CARBONIC ANHYDRASE
Glyma04g27580.1
AT3G27890
Q9LK88
35.2
not assigned.unknown
0.58
NADH-DEHYDROGENASE [complex I]
Glyma03g37250.1
AT2G47690
O82238
9.1.2
mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear
0.54
NADH-DEHYDROGENASE [localization unclear]
Glyma04g14250.1
AT4G29330
Q8VZU9
9.1.2
mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear
2.11
NADH-DEHYDROGENASE [localization unclear]
Glyma06g47560.1
AT4G29330
Q8VZU9
9.1.2
mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear
1.24
NADH-DEHYDROGENASE [localization unclear]
Glyma06g47560.2
#N/A
#N/A
#N/A
#N/A
1.98
NADH-DEHYDROGENASE [localization unclear]
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