Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G28890 | Q9LJW7 | 20.1 | stress.biotic | 2 | disease resistance protein |
AT3G59700 | Q96285 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2.3 | serine/threonine-specific kinase lecRK1 precursor |
AT4G04490 | Q9XEC6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.3 | putative receptor-like protein kinase |
AT1G11050 | O04086 | 30.2.23 | signalling.receptor kinases.RKF3 like | 2.5 | Ser/Thr protein kinase isolog |
AT4G23250 | Q8L710 | 30.2.17 | signalling.receptor kinases.DUF 26 | 1.8 | protein kinase - like protein |
AT1G51790 | F4IB60 | 30.2.99 | signalling.receptor kinases.misc | 1.7 | hypothetical protein |
AT4G04960 | Q9S9U1 | 30.2.19 | signalling.receptor kinases.legume-lectin | 1.9 | not found |
AT4G23230 | Q8W4G6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.1 | putative protein |
AT5G65240 | C0LGX1 | 30.2.2 | signalling.receptor kinases.leucine rich repeat II | 2.3 | receptor-like protein kinase |
AT2G24180 | O65787 | 26.1 | misc.cytochrome P450 | 2.1 | putative cytochrome P450 identical to GB:D78604; supported by cDNA: gi_15450907_gb_AY054534.1_ |
AT2G37430 | Q9SLD4 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 5 | putative C2H2-type zinc finger protein likely a nucleic acid binding protein |
AT2G18690 | Q9ZV49 | 35.2 | not assigned.unknown | 5.2 | unknown protein ; supported by cDNA: gi_14517479_gb_AY039575.1_ |