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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G28890
Q9LJW7
20.1
stress.biotic
2
disease resistance protein
AT3G59700
Q96285
30.2.19
signalling.receptor kinases.legume-lectin
2.3
serine/threonine-specific kinase lecRK1 precursor
AT4G04490
Q9XEC6
30.2.17
signalling.receptor kinases.DUF 26
2.3
putative receptor-like protein kinase
AT1G11050
O04086
30.2.23
signalling.receptor kinases.RKF3 like
2.5
Ser/Thr protein kinase isolog
AT4G23250
Q8L710
30.2.17
signalling.receptor kinases.DUF 26
1.8
protein kinase - like protein
AT1G51790
F4IB60
30.2.99
signalling.receptor kinases.misc
1.7
hypothetical protein
AT4G04960
Q9S9U1
30.2.19
signalling.receptor kinases.legume-lectin
1.9
not found
AT4G23230
Q8W4G6
30.2.17
signalling.receptor kinases.DUF 26
2.1
putative protein
AT5G65240
C0LGX1
30.2.2
signalling.receptor kinases.leucine rich repeat II
2.3
receptor-like protein kinase
AT2G24180
O65787
26.1
misc.cytochrome P450
2.1
putative cytochrome P450 identical to GB:D78604; supported by cDNA: gi_15450907_gb_AY054534.1_
AT2G37430
Q9SLD4
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
5
putative C2H2-type zinc finger protein likely a nucleic acid binding protein
AT2G18690
Q9ZV49
35.2
not assigned.unknown
5.2
unknown protein ; supported by cDNA: gi_14517479_gb_AY039575.1_
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