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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G23210
Q0PW40
30.2.17
signalling.receptor kinases.DUF 26
2.9
serine/threonine kinase - like protein
AT3G47090
Q9SD64
30.2.12
signalling.receptor kinases.leucine rich repeat XII
2.5
receptor kinase-like protein
AT4G04220
F4JGB6
20.1.7
stress.biotic.PR-proteins
2.4
putative disease resistance protein
AT4G23220
Q8H199
30.2.17
signalling.receptor kinases.DUF 26
2.8
serine/threonine kinase - like protein
AT3G53810
Q9M345
30.2.19
signalling.receptor kinases.legume-lectin
2.6
serine/threonine-specific kinase like protein
AT4G29050
Q9SZD5
30.2.19
signalling.receptor kinases.legume-lectin
2
serine/threonine-specific kinase like protein
AT4G33430
Q94F62
17.3.2.99
hormone metabolism.brassinosteroid.signal transduction.other
2.4
somatic embryogenesis receptor-like kinase -like protein
AT1G53430
C0LGG8
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
2.4
receptor-like serine/threonine kinase, putative
AT1G73080
Q9SSL9
30.2.11
signalling.receptor kinases.leucine rich repeat XI
1.9
hypothetical protein
AT1G53440
C0LGG9
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
2.3
receptor-like serine/threonine kinase
AT1G70530
Q9CAL2
30.2.17
signalling.receptor kinases.DUF 26
2.4
putative protein kinase
AT5G01950
F4KAX4
30.2.8.1
signalling.receptor kinases.leucine rich repeat VIII.VIII-1
2.2
putative protein
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