Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G23210 | Q0PW40 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.9 | serine/threonine kinase - like protein |
AT3G47090 | Q9SD64 | 30.2.12 | signalling.receptor kinases.leucine rich repeat XII | 2.5 | receptor kinase-like protein |
AT4G04220 | F4JGB6 | 20.1.7 | stress.biotic.PR-proteins | 2.4 | putative disease resistance protein |
AT4G23220 | Q8H199 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.8 | serine/threonine kinase - like protein |
AT3G53810 | Q9M345 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2.6 | serine/threonine-specific kinase like protein |
AT4G29050 | Q9SZD5 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2 | serine/threonine-specific kinase like protein |
AT4G33430 | Q94F62 | 17.3.2.99 | hormone metabolism.brassinosteroid.signal transduction.other | 2.4 | somatic embryogenesis receptor-like kinase -like protein |
AT1G53430 | C0LGG8 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.4 | receptor-like serine/threonine kinase, putative |
AT1G73080 | Q9SSL9 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 1.9 | hypothetical protein |
AT1G53440 | C0LGG9 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.3 | receptor-like serine/threonine kinase |
AT1G70530 | Q9CAL2 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.4 | putative protein kinase |
AT5G01950 | F4KAX4 | 30.2.8.1 | signalling.receptor kinases.leucine rich repeat VIII.VIII-1 | 2.2 | putative protein |