Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G33590 | Q9FW47 | 20.1.7 | stress.biotic.PR-proteins | 2.6 | hypothetical protein similar to putative disease resistance protein GB:AAC14512 GI:2739389 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:105146. |
AT1G30270 | Q93VD3 | 29.4 | protein.postranslational modification | 2.6 | serine/threonine kinase, putative similar to serine/threonine kinase GI:2632252 from [Sorghum bicolor]; supported by cDNA: gi_14486385_gb_AY035226.1_ |
AT1G32120 | F4ICK6 | 35.2 | not assigned.unknown | 3.6 | hypothetical protein similar to hypothetical protein GB:AAD27684 GI:4680504 from [Oryza sativa] |
AT1G58420 | Q9C647 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:124269. |
AT5G13490 | P40941 | 34.14 | transport.unspecified cations | 2.6 | adenosine nucleotide translocator ; supported by cDNA: gi_15292846_gb_AY050857.1_ |
AT1G57990 | Q9C508 | 34.1 | transport.nucleotides | 5.2 | unknown protein |
AT5G24780 | O49195 | 33.1 | development.storage proteins | 7.6 | vegetative storage protein Vsp1 ;supported by full-length cDNA: Ceres:32606. |
AT5G28540 | Q9LKR3 | 20.2.1 | stress.abiotic.heat | 2.3 | luminal binding protein ; supported by cDNA: gi_1303694_dbj_D84414.1_ATHBIPA |
AT5G13080 | Q9FYA2 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 8.6 | WRKY-like protein WRKY DNA binding protein - Solanum tuberosum, EMBL:AJ278507 |
AT5G10695 | F4KI93 | 35.2 | not assigned.unknown | 2.9 | Expressed protein ; supported by full-length cDNA: Ceres: 103171. |
AT5G20230 | Q07488 | 26.19 | misc.plastocyanin-like | 3.1 | blue copper binding protein ;supported by full-length cDNA: Ceres:7767. |
AT4G36990 | Q96320 | 20.2.1 | stress.abiotic.heat | 3.2 | heat shock transcription factor HSF4 ; supported by cDNA: gi_1619920_gb_U68017.1_ATU68017 |