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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G33590
Q9FW47
20.1.7
stress.biotic.PR-proteins
2.6
hypothetical protein similar to putative disease resistance protein GB:AAC14512 GI:2739389 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:105146.
AT1G30270
Q93VD3
29.4
protein.postranslational modification
2.6
serine/threonine kinase, putative similar to serine/threonine kinase GI:2632252 from [Sorghum bicolor]; supported by cDNA: gi_14486385_gb_AY035226.1_
AT1G32120
F4ICK6
35.2
not assigned.unknown
3.6
hypothetical protein similar to hypothetical protein GB:AAD27684 GI:4680504 from [Oryza sativa]
AT1G58420
Q9C647
35.2
not assigned.unknown
2.3
hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:124269.
AT5G13490
P40941
34.14
transport.unspecified cations
2.6
adenosine nucleotide translocator ; supported by cDNA: gi_15292846_gb_AY050857.1_
AT1G57990
Q9C508
34.1
transport.nucleotides
5.2
unknown protein
AT5G24780
O49195
33.1
development.storage proteins
7.6
vegetative storage protein Vsp1 ;supported by full-length cDNA: Ceres:32606.
AT5G28540
Q9LKR3
20.2.1
stress.abiotic.heat
2.3
luminal binding protein ; supported by cDNA: gi_1303694_dbj_D84414.1_ATHBIPA
AT5G13080
Q9FYA2
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
8.6
WRKY-like protein WRKY DNA binding protein - Solanum tuberosum, EMBL:AJ278507
AT5G10695
F4KI93
35.2
not assigned.unknown
2.9
Expressed protein ; supported by full-length cDNA: Ceres: 103171.
AT5G20230
Q07488
26.19
misc.plastocyanin-like
3.1
blue copper binding protein ;supported by full-length cDNA: Ceres:7767.
AT4G36990
Q96320
20.2.1
stress.abiotic.heat
3.2
heat shock transcription factor HSF4 ; supported by cDNA: gi_1619920_gb_U68017.1_ATU68017
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