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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT4G16260
Q8VZJ2
26.4.1
misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase
3.3
beta-1,3-glucanase class I precursor ;supported by full-length cDNA: Ceres:3176.
AT4G17470
Q501G7
11.9.1
lipid metabolism.lipid degradation.palmitoyl[protein] hydrolase
2.8
putative protein
AT4G16960
F4JNB9
20.1.7
stress.biotic.PR-proteins
2.1
disease resistance RPP5 like protein
AT4G16250
P42497
30.11
signalling.light
2
phytochrome D
AT4G14220
Q4TU14
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.1
RING-H2 finger protein RHF1a
AT1G25275
B9DGT3
35.2
not assigned.unknown
2.3
Expressed protein ; supported by full-length cDNA: Ceres: 21980.
AT1G28190
Q9FZ93
35.2
not assigned.unknown
7
hypothetical protein predicted by genemark.hmm
AT5G04170
Q9FYE4
30.3
signalling.calcium
2.7
EF - hand Calcium binding protein - like
AT5G04340
O22533
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
3
putative c2h2 zinc finger transcription factor
AT1G44130
Q9C6Y5
29.5
protein.degradation
2.5
nucellin, putative similar to nucellin GI:2290201 from [Hordeum vulgare]
AT1G35210
Q9C6F2
35.2
not assigned.unknown
3.6
hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:42217.
AT1G33600
Q9FW48
35.1
not assigned.no ontology
3.4
hypothetical protein similar to putative disease resistance protein GB:AAC14512 GI:2739389 from [Arabidopsis thaliana]
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