Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT4G16260 | Q8VZJ2 | 26.4.1 | misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase | 3.3 | beta-1,3-glucanase class I precursor ;supported by full-length cDNA: Ceres:3176. |
AT4G17470 | Q501G7 | 11.9.1 | lipid metabolism.lipid degradation.palmitoyl[protein] hydrolase | 2.8 | putative protein |
AT4G16960 | F4JNB9 | 20.1.7 | stress.biotic.PR-proteins | 2.1 | disease resistance RPP5 like protein |
AT4G16250 | P42497 | 30.11 | signalling.light | 2 | phytochrome D |
AT4G14220 | Q4TU14 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.1 | RING-H2 finger protein RHF1a |
AT1G25275 | B9DGT3 | 35.2 | not assigned.unknown | 2.3 | Expressed protein ; supported by full-length cDNA: Ceres: 21980. |
AT1G28190 | Q9FZ93 | 35.2 | not assigned.unknown | 7 | hypothetical protein predicted by genemark.hmm |
AT5G04170 | Q9FYE4 | 30.3 | signalling.calcium | 2.7 | EF - hand Calcium binding protein - like |
AT5G04340 | O22533 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 3 | putative c2h2 zinc finger transcription factor |
AT1G44130 | Q9C6Y5 | 29.5 | protein.degradation | 2.5 | nucellin, putative similar to nucellin GI:2290201 from [Hordeum vulgare] |
AT1G35210 | Q9C6F2 | 35.2 | not assigned.unknown | 3.6 | hypothetical protein predicted by genemark.hmm;supported by full-length cDNA: Ceres:42217. |
AT1G33600 | Q9FW48 | 35.1 | not assigned.no ontology | 3.4 | hypothetical protein similar to putative disease resistance protein GB:AAC14512 GI:2739389 from [Arabidopsis thaliana] |