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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT3G55950
Q9LY50
30.2.26
signalling.receptor kinases.crinkly like
6.6
receptor kinase - like protein
AT1G51890
C0LGG6
30.2.99
signalling.receptor kinases.misc
7.4
light repressible receptor protein kinase, putative
AT1G51800
Q9C8I6
30.2.99
signalling.receptor kinases.misc
6.3
hypothetical protein
AT2G19190
O64483
30.2.1
signalling.receptor kinases.leucine rich repeat I
5.3
putative receptor-like protein kinase
AT1G09970
F4I2N7
30.2.11
signalling.receptor kinases.leucine rich repeat XI
5
unknown protein
AT5G25930
Q9XGZ2
30.2.11
signalling.receptor kinases.leucine rich repeat XI
5
receptor-like protein kinase - like
AT4G23280
O65479
30.2.17
signalling.receptor kinases.DUF 26
5.2
serine /threonine kinase - like protein
AT1G79680
Q8VYA3
30.2.25
signalling.receptor kinases.wall associated kinase
4.6
wall-associated kinase 2, putative
AT4G21400
O65405
30.2.17
signalling.receptor kinases.DUF 26
2.7
serine/threonine protein kinase - like protein
AT1G21240
Q9LMN8
30.2.25
signalling.receptor kinases.wall associated kinase
3.9
hypothetical protein
AT5G01540
Q9M021
30.2.99
signalling.receptor kinases.misc
3.2
receptor like protein kinase
AT5G46330
Q9FL28
30.2.12
signalling.receptor kinases.leucine rich repeat XII
2.9
receptor protein kinase - like protein
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