Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT3G55950 | Q9LY50 | 30.2.26 | signalling.receptor kinases.crinkly like | 6.6 | receptor kinase - like protein |
AT1G51890 | C0LGG6 | 30.2.99 | signalling.receptor kinases.misc | 7.4 | light repressible receptor protein kinase, putative |
AT1G51800 | Q9C8I6 | 30.2.99 | signalling.receptor kinases.misc | 6.3 | hypothetical protein |
AT2G19190 | O64483 | 30.2.1 | signalling.receptor kinases.leucine rich repeat I | 5.3 | putative receptor-like protein kinase |
AT1G09970 | F4I2N7 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | unknown protein |
AT5G25930 | Q9XGZ2 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | receptor-like protein kinase - like |
AT4G23280 | O65479 | 30.2.17 | signalling.receptor kinases.DUF 26 | 5.2 | serine /threonine kinase - like protein |
AT1G79680 | Q8VYA3 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 4.6 | wall-associated kinase 2, putative |
AT4G21400 | O65405 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.7 | serine/threonine protein kinase - like protein |
AT1G21240 | Q9LMN8 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 3.9 | hypothetical protein |
AT5G01540 | Q9M021 | 30.2.99 | signalling.receptor kinases.misc | 3.2 | receptor like protein kinase |
AT5G46330 | Q9FL28 | 30.2.12 | signalling.receptor kinases.leucine rich repeat XII | 2.9 | receptor protein kinase - like protein |