Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G67810 | Q9FXE3 | 18.7 | Co-factor and vitamine metabolism.iron-sulphur clusters | 7.2 | F12A21.6 hypothetical protein |
AT1G67800 | Q8LB88 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.1 | F12A21.7 hypothetical protein;supported by full-length cDNA: Ceres:34552. |
AT5G12340 | Q94CK8 | 35.2 | not assigned.unknown | 3.2 | putative protein similarity to predicted protein, Arabidopsis thaliana |
AT4G17230 | Q9M0M5 | 27.3.21 | RNA.regulation of transcription.GRAS transcription factor family | 2.7 | scarecrow-like 13 (SCL13) ; supported by cDNA: gi_16930432_gb_AF419570.1_AF419570 |
AT4G17250 | O23568 | 35.2 | not assigned.unknown | 2.2 | hypothetical protein ; supported by cDNA: gi_16323154_gb_AY057681.1_ |
AT4G16660 | F4JMJ1 | 20.2.1 | stress.abiotic.heat | 2 | HSP like protein ; supported by cDNA: gi_15293148_gb_AY051008.1_ |
AT4G17486 | Q93VG8 | 35.2 | not assigned.unknown | 2.1 | putative protein ; supported by cDNA: gi_13358188_gb_AF324997.2_AF324997 |
AT4G14365 | Q9FPH0 | 31.1 | cell.organisation | 3.5 | Expressed protein ; supported by full-length cDNA: Ceres: 37809. |
AT4G14420 | O23298 | 35.1 | not assigned.no ontology | 2.7 | elicitor like protein ; supported by full-length cDNA: Ceres: 1718. |
AT4G16000 | Q0WWC4 | 35.2 | not assigned.unknown | 2.1 | hypothetical protein ;supported by full-length cDNA: Ceres:9209. |
AT4G17720 | O23612 | 27.4 | RNA.RNA binding | 2.2 | hypothetical protein ;supported by full-length cDNA: Ceres:39922. |
AT4G15975 | Q8LF65 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 3.3 | Expressed protein ; supported by full-length cDNA: Ceres: 124835. |