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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G67810
Q9FXE3
18.7
Co-factor and vitamine metabolism.iron-sulphur clusters
7.2
F12A21.6 hypothetical protein
AT1G67800
Q8LB88
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.1
F12A21.7 hypothetical protein;supported by full-length cDNA: Ceres:34552.
AT5G12340
Q94CK8
35.2
not assigned.unknown
3.2
putative protein similarity to predicted protein, Arabidopsis thaliana
AT4G17230
Q9M0M5
27.3.21
RNA.regulation of transcription.GRAS transcription factor family
2.7
scarecrow-like 13 (SCL13) ; supported by cDNA: gi_16930432_gb_AF419570.1_AF419570
AT4G17250
O23568
35.2
not assigned.unknown
2.2
hypothetical protein ; supported by cDNA: gi_16323154_gb_AY057681.1_
AT4G16660
F4JMJ1
20.2.1
stress.abiotic.heat
2
HSP like protein ; supported by cDNA: gi_15293148_gb_AY051008.1_
AT4G17486
Q93VG8
35.2
not assigned.unknown
2.1
putative protein ; supported by cDNA: gi_13358188_gb_AF324997.2_AF324997
AT4G14365
Q9FPH0
31.1
cell.organisation
3.5
Expressed protein ; supported by full-length cDNA: Ceres: 37809.
AT4G14420
O23298
35.1
not assigned.no ontology
2.7
elicitor like protein ; supported by full-length cDNA: Ceres: 1718.
AT4G16000
Q0WWC4
35.2
not assigned.unknown
2.1
hypothetical protein ;supported by full-length cDNA: Ceres:9209.
AT4G17720
O23612
27.4
RNA.RNA binding
2.2
hypothetical protein ;supported by full-length cDNA: Ceres:39922.
AT4G15975
Q8LF65
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
3.3
Expressed protein ; supported by full-length cDNA: Ceres: 124835.
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