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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G61210
Q9S7P9
31.4
cell.vesicle transport
2.2
snap25a ;supported by full-length cDNA: Ceres:14562.
ATCG00760
P62117
29.2.1.1.1.2.36
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L36
2.2
ribosomal protein L36
ATCG00770
P56801
29.2.1.1.1.1.8
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S8
2.5
ribosomal protein S8
ATCG00350
P56766
1.1.2.2
PS.lightreaction.photosystem I.PSI polypeptide subunits
2.6
PSI P700 apoprotein A1
AT2G26390
O48706
29.5.5
protein.degradation.serine protease
2.4
putative serpin
AT2G26560
O48723
33.1
development.storage proteins
5.4
similar to latex allergen from Hevea brasiliensis ;supported by full-length cDNA: Ceres:1999.
AT2G26530
F4IUL5
35.2
not assigned.unknown
3.8
AR781, similar to yeast pheromone receptor identical to GB:D88743, corrected a frameshift found in the original record (at 69530 bp), sequence submitted has been verified from 10 sequence electropherograms. The translation now starts from an upstream A
AT2G23270
O22181
35.2
not assigned.unknown
4.3
hypothetical protein predicted by genefinder; similar to GP|2464853|gnl|PID|e353149|Z99707;supported by full-length cDNA: Ceres:40943.
AT2G40940
Q38846
17.5.2
hormone metabolism.ethylene.signal transduction
2.2
ethylene response sensor (ERS) identical to GB:U21952:ATU21952; supported by cDNA: gi_15450903_gb_AY054532.1_
AT2G45220
O22149
10.8.99
cell wall.pectin*esterases.misc
3.1
putative pectinesterase ; supported by cDNA: gi_13605695_gb_AF361829.1_AF361829
AT5G12480
Q38873
30.3
signalling.calcium
2.3
calcium-dependent protein kinase-like protein strong similarity to calcium-dependent protein kinase 19, Arabidopsis thaliana, PIR:S71778~Contains EF-hand calcium-binding domain AA409-421;EF-hand calcium-binding domain AA445-457;EF-hand calcium-bindin
AT5G12420
Q94CK0
9.9
mitochondrial electron transport / ATP synthesis.F1-ATPase
3.3
putative protein similarity to various predicted proteins~Contains ATP synthase delta (OSCP) subunit signature AA211-230;Prokaryotic membrane lipoprotein lipid attachment site AA140-150
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