Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G61210 | Q9S7P9 | 31.4 | cell.vesicle transport | 2.2 | snap25a ;supported by full-length cDNA: Ceres:14562. |
ATCG00760 | P62117 | 29.2.1.1.1.2.36 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L36 | 2.2 | ribosomal protein L36 |
ATCG00770 | P56801 | 29.2.1.1.1.1.8 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S8 | 2.5 | ribosomal protein S8 |
ATCG00350 | P56766 | 1.1.2.2 | PS.lightreaction.photosystem I.PSI polypeptide subunits | 2.6 | PSI P700 apoprotein A1 |
AT2G26390 | O48706 | 29.5.5 | protein.degradation.serine protease | 2.4 | putative serpin |
AT2G26560 | O48723 | 33.1 | development.storage proteins | 5.4 | similar to latex allergen from Hevea brasiliensis ;supported by full-length cDNA: Ceres:1999. |
AT2G26530 | F4IUL5 | 35.2 | not assigned.unknown | 3.8 | AR781, similar to yeast pheromone receptor identical to GB:D88743, corrected a frameshift found in the original record (at 69530 bp), sequence submitted has been verified from 10 sequence electropherograms. The translation now starts from an upstream A |
AT2G23270 | O22181 | 35.2 | not assigned.unknown | 4.3 | hypothetical protein predicted by genefinder; similar to GP|2464853|gnl|PID|e353149|Z99707;supported by full-length cDNA: Ceres:40943. |
AT2G40940 | Q38846 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 2.2 | ethylene response sensor (ERS) identical to GB:U21952:ATU21952; supported by cDNA: gi_15450903_gb_AY054532.1_ |
AT2G45220 | O22149 | 10.8.99 | cell wall.pectin*esterases.misc | 3.1 | putative pectinesterase ; supported by cDNA: gi_13605695_gb_AF361829.1_AF361829 |
AT5G12480 | Q38873 | 30.3 | signalling.calcium | 2.3 | calcium-dependent protein kinase-like protein strong similarity to calcium-dependent protein kinase 19, Arabidopsis thaliana, PIR:S71778~Contains EF-hand calcium-binding domain AA409-421;EF-hand calcium-binding domain AA445-457;EF-hand calcium-bindin |
AT5G12420 | Q94CK0 | 9.9 | mitochondrial electron transport / ATP synthesis.F1-ATPase | 3.3 | putative protein similarity to various predicted proteins~Contains ATP synthase delta (OSCP) subunit signature AA211-230;Prokaryotic membrane lipoprotein lipid attachment site AA140-150 |