Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G64510 | Q84JN2 | 35.2 | not assigned.unknown | 2.1 | putative protein similar to unknown protein (pir |T03813) |
AT5G63880 | Q8GXN6 | 27.3.71 | RNA.regulation of transcription.SNF7 | 2.5 | unknown protein ;supported by full-length cDNA: Ceres:13993. |
AT5G64120 | Q43387 | 26.12 | misc.peroxidases | 4.1 | peroxidase (emb|CAA67551.1) ;supported by full-length cDNA: Ceres:23349. |
AT5G63790 | Q8H115 | 33.99 | development.unspecified | 2.5 | putative protein contains similarity to NAC-domain protein;supported by full-length cDNA: Ceres:6637. |
AT5G62860 | F4K7U3 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2 | putative protein predicted proteins, Arabidopsis thaliana |
AT5G62620 | Q9LV16 | 10.3 | cell wall.hemicellulose synthesis | 2.7 | putative protein strong similarity to unknown protein (gb AAD55296.1) |
AT5G62180 | Q9LVB8 | 35.1 | not assigned.no ontology | 2.4 | putative protein PrMC3, Pinus radiata, EMBL:AF110333 |
AT5G62150 | Q9FIS3 | 10.6 | cell wall.degradation | 2.7 | putative protein predicted protein, Arabidopsis thaliana |
AT5G61900 | Q941L3 | 30.3 | signalling.calcium | 2.4 | copine - like protein copine I, Homo sapiens, EMBL:HSU83246;supported by full-length cDNA: Ceres:146738. |
AT5G61790 | P29402 | 30.3 | signalling.calcium | 2.2 | calnexin - like protein calnexin homolog, Arabidopsis thaliana, EMBL:AT08315;supported by full-length cDNA: Ceres:2869. |
AT5G61560 | Q9FKG5 | 20.1 | stress.biotic | 3.1 | putative protein disease resistance protein kinase Pto, Lycopersiocon esculentum, PIR:A49332 |
AT5G61530 | Q3E875 | 30.5 | signalling.G-proteins | 2.1 | putative protein rhoGAP, Homo sapiens, EMBL:Z23024; supported by full-length cDNA: Ceres: 152557. |