top of page
Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

​

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

​

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G64510
Q84JN2
35.2
not assigned.unknown
2.1
putative protein similar to unknown protein (pir |T03813)
AT5G63880
Q8GXN6
27.3.71
RNA.regulation of transcription.SNF7
2.5
unknown protein ;supported by full-length cDNA: Ceres:13993.
AT5G64120
Q43387
26.12
misc.peroxidases
4.1
peroxidase (emb|CAA67551.1) ;supported by full-length cDNA: Ceres:23349.
AT5G63790
Q8H115
33.99
development.unspecified
2.5
putative protein contains similarity to NAC-domain protein;supported by full-length cDNA: Ceres:6637.
AT5G62860
F4K7U3
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2
putative protein predicted proteins, Arabidopsis thaliana
AT5G62620
Q9LV16
10.3
cell wall.hemicellulose synthesis
2.7
putative protein strong similarity to unknown protein (gb AAD55296.1)
AT5G62180
Q9LVB8
35.1
not assigned.no ontology
2.4
putative protein PrMC3, Pinus radiata, EMBL:AF110333
AT5G62150
Q9FIS3
10.6
cell wall.degradation
2.7
putative protein predicted protein, Arabidopsis thaliana
AT5G61900
Q941L3
30.3
signalling.calcium
2.4
copine - like protein copine I, Homo sapiens, EMBL:HSU83246;supported by full-length cDNA: Ceres:146738.
AT5G61790
P29402
30.3
signalling.calcium
2.2
calnexin - like protein calnexin homolog, Arabidopsis thaliana, EMBL:AT08315;supported by full-length cDNA: Ceres:2869.
AT5G61560
Q9FKG5
20.1
stress.biotic
3.1
putative protein disease resistance protein kinase Pto, Lycopersiocon esculentum, PIR:A49332
AT5G61530
Q3E875
30.5
signalling.G-proteins
2.1
putative protein rhoGAP, Homo sapiens, EMBL:Z23024; supported by full-length cDNA: Ceres: 152557.
bottom of page