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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G67080
Q9FHA5
29.4
protein.postranslational modification
6.6
protein kinase-like protein
AT5G66850
Q9C5H5
30.6
signalling.MAP kinases
2.4
MAP protein kinase ; supported by cDNA: gi_13430659_gb_AF360242.1_AF360242
AT5G66890
Q9FKZ2
20.1.7
stress.biotic.PR-proteins
4.3
putative protein contains similarity to disease resistance protein
AT5G66640
Q9LVR6
35.1
not assigned.no ontology
2
putative protein similar to unknown protein (emb CAB16816.1)
AT5G66320
Q9FH57
27.3.9
RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family
2.9
GATA-binding transcription factor-like protein
AT5G66070
Q9FKX5
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2.3
putative protein contains similarity to unknown protein (gb|AAF18680.1)
AT5G65310
P46667
27.3.22
RNA.regulation of transcription.HB,Homeobox transcription factor family
2.6
homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (sp|P46667) ; supported by cDNA: gi_13358240_gb_AF325054.2_AF325054
AT5G65240
C0LGX1
30.2.2
signalling.receptor kinases.leucine rich repeat II
2.3
receptor-like protein kinase
AT5G64890
Q9LV88
20.1.3
stress.biotic.signalling
3.9
unknown protein ;supported by full-length cDNA: Ceres:9242.
AT5G64870
Q9LV90
35.2
not assigned.unknown
3.3
nodulin-like ;supported by full-length cDNA: Ceres:142026.
AT5G64905
Q8LAX3
20.1.3
stress.biotic.signalling
9.8
Expressed protein ; supported by full-length cDNA: Ceres: 3657.
AT5G64660
Q9FLF4
27.3.64
RNA.regulation of transcription.PHOR1
2.2
putative protein strong similarity to unknown protein (emb|CAB89350.1)
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