Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G67080 | Q9FHA5 | 29.4 | protein.postranslational modification | 6.6 | protein kinase-like protein |
AT5G66850 | Q9C5H5 | 30.6 | signalling.MAP kinases | 2.4 | MAP protein kinase ; supported by cDNA: gi_13430659_gb_AF360242.1_AF360242 |
AT5G66890 | Q9FKZ2 | 20.1.7 | stress.biotic.PR-proteins | 4.3 | putative protein contains similarity to disease resistance protein |
AT5G66640 | Q9LVR6 | 35.1 | not assigned.no ontology | 2 | putative protein similar to unknown protein (emb CAB16816.1) |
AT5G66320 | Q9FH57 | 27.3.9 | RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family | 2.9 | GATA-binding transcription factor-like protein |
AT5G66070 | Q9FKX5 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2.3 | putative protein contains similarity to unknown protein (gb|AAF18680.1) |
AT5G65310 | P46667 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | 2.6 | homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (sp|P46667) ; supported by cDNA: gi_13358240_gb_AF325054.2_AF325054 |
AT5G65240 | C0LGX1 | 30.2.2 | signalling.receptor kinases.leucine rich repeat II | 2.3 | receptor-like protein kinase |
AT5G64890 | Q9LV88 | 20.1.3 | stress.biotic.signalling | 3.9 | unknown protein ;supported by full-length cDNA: Ceres:9242. |
AT5G64870 | Q9LV90 | 35.2 | not assigned.unknown | 3.3 | nodulin-like ;supported by full-length cDNA: Ceres:142026. |
AT5G64905 | Q8LAX3 | 20.1.3 | stress.biotic.signalling | 9.8 | Expressed protein ; supported by full-length cDNA: Ceres: 3657. |
AT5G64660 | Q9FLF4 | 27.3.64 | RNA.regulation of transcription.PHOR1 | 2.2 | putative protein strong similarity to unknown protein (emb|CAB89350.1) |