top of page
Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

​

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

​

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G27380
P46416
21.2.2
redox.ascorbate and glutathione.glutathione
2.5
glutathione synthetase gsh2 non-consensus AT donor splice site at exon 6, AC acceptor splice site at exon 7; supported by cDNA: gi_758451_gb_U22359.1_ATU22359
AT5G26920
F4K2R6
30.3
signalling.calcium
3.8
calmodulin-binding - like protein calmodulin-binding protein TCB60, Nicotiana tabacum, EMBL:U58971
AT5G26340
Q94AZ2
34.2
transport.sugars
3.9
hexose transporter - like protein hexose transporter HT2, Lycopersicon esculentum, EMBL:LES132224; supported by cDNA: gi_15010579_gb_AY045591.1_
AT5G25930
Q9XGZ2
30.2.11
signalling.receptor kinases.leucine rich repeat XI
5
receptor-like protein kinase - like receptor-like protein kinase 5, Arabidopsis thaliana, PIR:S27756
AT5G26030
P42043
19.2
tetrapyrrole synthesis.ferrochelatase
2.4
ferrochelatase-I
AT5G25560
F4JY60
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
2
putative protein predicted proteins, Arabidopsis thaliana and Drosophila melanogaster
AT5G25260
Q4V3D6
35.2
not assigned.unknown
5.5
nodulin - like protein nodulin, Glycine max, EMBL:AF065435
AT5G25170
Q6NQ19
35.2
not assigned.unknown
2.9
putative protein apoptosis-related protein PNAS-4, Homo sapiens, EMBL:AF229834;supported by full-length cDNA: Ceres:263500.
AT5G25440
C0Z2S0
29.4.1.52
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase II
2.1
putative protein kinase serine/threonine/tyrosine-specific protein kinase APK1 - Arabidopsis thaliana, PIR:S28615
AT5G25450
F4JWS8
9.5
mitochondrial electron transport / ATP synthesis.cytochrome c reductase
3.2
ubiquinol--cytochrome-c reductase-like protein ubiquinol--cytochrome-c reductase (EC 1.10.2.2) - Arabidopsis thaliana, PIR:T05357
AT5G67340
Q5XEZ8
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
3.1
putative protein strong similarity to unknown protein (pir||T00518)
AT5G67450
Q9SSW1
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
4.5
Cys2/His2-type zinc finger protein 1 (dbj|BAA85108.1)
bottom of page