Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G27380 | P46416 | 21.2.2 | redox.ascorbate and glutathione.glutathione | 2.5 | glutathione synthetase gsh2 non-consensus AT donor splice site at exon 6, AC acceptor splice site at exon 7; supported by cDNA: gi_758451_gb_U22359.1_ATU22359 |
AT5G26920 | F4K2R6 | 30.3 | signalling.calcium | 3.8 | calmodulin-binding - like protein calmodulin-binding protein TCB60, Nicotiana tabacum, EMBL:U58971 |
AT5G26340 | Q94AZ2 | 34.2 | transport.sugars | 3.9 | hexose transporter - like protein hexose transporter HT2, Lycopersicon esculentum, EMBL:LES132224; supported by cDNA: gi_15010579_gb_AY045591.1_ |
AT5G25930 | Q9XGZ2 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | receptor-like protein kinase - like receptor-like protein kinase 5, Arabidopsis thaliana, PIR:S27756 |
AT5G26030 | P42043 | 19.2 | tetrapyrrole synthesis.ferrochelatase | 2.4 | ferrochelatase-I |
AT5G25560 | F4JY60 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2 | putative protein predicted proteins, Arabidopsis thaliana and Drosophila melanogaster |
AT5G25260 | Q4V3D6 | 35.2 | not assigned.unknown | 5.5 | nodulin - like protein nodulin, Glycine max, EMBL:AF065435 |
AT5G25170 | Q6NQ19 | 35.2 | not assigned.unknown | 2.9 | putative protein apoptosis-related protein PNAS-4, Homo sapiens, EMBL:AF229834;supported by full-length cDNA: Ceres:263500. |
AT5G25440 | C0Z2S0 | 29.4.1.52 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase II | 2.1 | putative protein kinase serine/threonine/tyrosine-specific protein kinase APK1 - Arabidopsis thaliana, PIR:S28615 |
AT5G25450 | F4JWS8 | 9.5 | mitochondrial electron transport / ATP synthesis.cytochrome c reductase | 3.2 | ubiquinol--cytochrome-c reductase-like protein ubiquinol--cytochrome-c reductase (EC 1.10.2.2) - Arabidopsis thaliana, PIR:T05357 |
AT5G67340 | Q5XEZ8 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 3.1 | putative protein strong similarity to unknown protein (pir||T00518) |
AT5G67450 | Q9SSW1 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 4.5 | Cys2/His2-type zinc finger protein 1 (dbj|BAA85108.1) |