Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G16540 | Q9C5X8 | 17.1.1 | hormone metabolism.abscisic acid.synthesis-degradation | 2.2 | hypothetical protein contains similarity to molybdopterin cofactor sulfurase GI:8978317 from [Bos taurus]; supported by cDNA: gi_13123672_gb_AF325457.1_AF325457 |
AT1G51890 | C0LGG6 | 30.2.99 | signalling.receptor kinases.misc | 7.4 | light repressible receptor protein kinase, putative similar to light repressible receptor protein kinase GI:1321686 from [Arabidopsis thaliana] |
AT1G51920 | F4IB79 | 35.2 | not assigned.unknown | 8.9 | hypothetical protein predicted by genemark.hmm |
AT5G16080 | Q9LFR7 | 24 | Biodegradation of Xenobiotics | 2.1 | putative protein cell death associated protein - Nicotiana tabacum, EMBL:AF212184;supported by full-length cDNA: Ceres:37170. |
AT5G16230 | Q9LF05 | 11.1.15 | lipid metabolism.FA synthesis and FA elongation.ACP desaturase | 2.2 | stearoyl-acyl carrier protein desaturase stearoyl-acyl carrier protein desaturase sad1 - Linum usitatissimum, EMBL:AJ006957 |
AT5G15640 | Q949U9 | 34.9 | transport.metabolite transporters at the mitochondrial membrane | 2.1 | putative mitochondrial carrier protein Mitochondrial carrier protein - Ribes nigrum, EMBL:AJ007580;supported by full-length cDNA: Ceres:18738. |
AT5G15730 | Q9LFV3 | 30.2.1 | signalling.receptor kinases.leucine rich repeat I | 2.6 | serine/threonine-specific protein kinase-like protein serine/threonine-specific protein kinase NPK15 - Nicotiana tabacum;supported by full-length cDNA: Ceres:25636. |
AT1G31690 | F4IAX0 | 26.7 | misc.oxidases - copper, flavone etc | 2.9 | copper amine oxidase, putative similar to copper amine oxidase GI:3819099 from [Cicer arietinum] |
AT5G33290 | Q94AA9 | 10.4.4.1 | cell wall.pectin synthesis.Xylogalacturonan.Xylose Transferase | 3 | putative protein EXOSTOSIN-1 (PUTATIVE TUMOR SUPPRESSOR PROTEIN EXT1) - Homo sapiens, EMBL:S79639 |
AT5G27760 | Q8LG60 | 35.1 | not assigned.no ontology | 2.6 | putative protein predicted protein, Arabidopsis thaliana; supported by full-length cDNA: Ceres: 108472. |
AT5G27420 | Q8LGA5 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 6.8 | RING-H2 zinc finger protein-like RING-H2 zinc finger protein ATL6 - Arabidopsis thaliana, EMBL:AF132016;supported by full-length cDNA: Ceres:106078. |
AT5G27520 | Q8VZS0 | 34.9 | transport.metabolite transporters at the mitochondrial membrane | 2.4 | putative protein peroxisomal integral membrane protein - Homo sapiens;supported by full-length cDNA: Ceres:20865. |