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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G16540
Q9C5X8
17.1.1
hormone metabolism.abscisic acid.synthesis-degradation
2.2
hypothetical protein contains similarity to molybdopterin cofactor sulfurase GI:8978317 from [Bos taurus]; supported by cDNA: gi_13123672_gb_AF325457.1_AF325457
AT1G51890
C0LGG6
30.2.99
signalling.receptor kinases.misc
7.4
light repressible receptor protein kinase, putative similar to light repressible receptor protein kinase GI:1321686 from [Arabidopsis thaliana]
AT1G51920
F4IB79
35.2
not assigned.unknown
8.9
hypothetical protein predicted by genemark.hmm
AT5G16080
Q9LFR7
24
Biodegradation of Xenobiotics
2.1
putative protein cell death associated protein - Nicotiana tabacum, EMBL:AF212184;supported by full-length cDNA: Ceres:37170.
AT5G16230
Q9LF05
11.1.15
lipid metabolism.FA synthesis and FA elongation.ACP desaturase
2.2
stearoyl-acyl carrier protein desaturase stearoyl-acyl carrier protein desaturase sad1 - Linum usitatissimum, EMBL:AJ006957
AT5G15640
Q949U9
34.9
transport.metabolite transporters at the mitochondrial membrane
2.1
putative mitochondrial carrier protein Mitochondrial carrier protein - Ribes nigrum, EMBL:AJ007580;supported by full-length cDNA: Ceres:18738.
AT5G15730
Q9LFV3
30.2.1
signalling.receptor kinases.leucine rich repeat I
2.6
serine/threonine-specific protein kinase-like protein serine/threonine-specific protein kinase NPK15 - Nicotiana tabacum;supported by full-length cDNA: Ceres:25636.
AT1G31690
F4IAX0
26.7
misc.oxidases - copper, flavone etc
2.9
copper amine oxidase, putative similar to copper amine oxidase GI:3819099 from [Cicer arietinum]
AT5G33290
Q94AA9
10.4.4.1
cell wall.pectin synthesis.Xylogalacturonan.Xylose Transferase
3
putative protein EXOSTOSIN-1 (PUTATIVE TUMOR SUPPRESSOR PROTEIN EXT1) - Homo sapiens, EMBL:S79639
AT5G27760
Q8LG60
35.1
not assigned.no ontology
2.6
putative protein predicted protein, Arabidopsis thaliana; supported by full-length cDNA: Ceres: 108472.
AT5G27420
Q8LGA5
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
6.8
RING-H2 zinc finger protein-like RING-H2 zinc finger protein ATL6 - Arabidopsis thaliana, EMBL:AF132016;supported by full-length cDNA: Ceres:106078.
AT5G27520
Q8VZS0
34.9
transport.metabolite transporters at the mitochondrial membrane
2.4
putative protein peroxisomal integral membrane protein - Homo sapiens;supported by full-length cDNA: Ceres:20865.
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