Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G47730 | Q9FIK6 | 29.3.4.99 | protein.targeting.secretory pathway.unspecified | 3.6 | putative protein strong similarity to unknown protein (pir||T05949) |
AT5G47420 | Q8RXM5 | 35.2 | not assigned.unknown | 2.3 | putative protein similar to unknown protein (pir||F71443) |
AT5G47240 | Q8L7W2 | 23.3.3 | nucleotide metabolism.salvage.NUDIX hydrolases | 2.6 | mutT domain protein-like ;supported by full-length cDNA: Ceres:38400. |
AT5G46910 | F4KIX0 | 27.3.57 | RNA.regulation of transcription.JUMONJI family | 2.3 | putative protein similar to unknown protein (pir||T06699) |
AT5G47070 | Q9LTC0 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 2.1 | protein serine threonine kinase-like |
AT5G46710 | Q9FIQ4 | 27.3.99 | RNA.regulation of transcription.unclassified | 2.7 | putative protein similar to unknown protein (pir||T05076);supported by full-length cDNA: Ceres:42747. |
AT5G46470 | F4KHH8 | 20.1.7 | stress.biotic.PR-proteins | 2.2 | disease resistance protein-like |
AT5G46330 | Q9FL28 | 30.2.12 | signalling.receptor kinases.leucine rich repeat XII | 2.9 | receptor protein kinase |
AT5G46080 | Q9FNL4 | 30.2.99 | signalling.receptor kinases.misc | 3.9 | serine/threonine protein kinase-like protein |
AT5G44990 | Q9FL98 | 35.2 | not assigned.unknown | 5.3 | putative protein strong similarity to unknown protein (pir||T04769) |
AT5G44400 | Q9FKU8 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2 | berberine bridge enzyme |
AT3G56880 | Q9LES0 | 35.1 | not assigned.no ontology | 2.6 | putative protein predicted protein At2g41010 - Arabidopsis thaliana, EMBL:AC004261;supported by full-length cDNA: Ceres:39584. |