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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G47730
Q9FIK6
29.3.4.99
protein.targeting.secretory pathway.unspecified
3.6
putative protein strong similarity to unknown protein (pir||T05949)
AT5G47420
Q8RXM5
35.2
not assigned.unknown
2.3
putative protein similar to unknown protein (pir||F71443)
AT5G47240
Q8L7W2
23.3.3
nucleotide metabolism.salvage.NUDIX hydrolases
2.6
mutT domain protein-like ;supported by full-length cDNA: Ceres:38400.
AT5G46910
F4KIX0
27.3.57
RNA.regulation of transcription.JUMONJI family
2.3
putative protein similar to unknown protein (pir||T06699)
AT5G47070
Q9LTC0
29.4.1.57
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII
2.1
protein serine threonine kinase-like
AT5G46710
Q9FIQ4
27.3.99
RNA.regulation of transcription.unclassified
2.7
putative protein similar to unknown protein (pir||T05076);supported by full-length cDNA: Ceres:42747.
AT5G46470
F4KHH8
20.1.7
stress.biotic.PR-proteins
2.2
disease resistance protein-like
AT5G46330
Q9FL28
30.2.12
signalling.receptor kinases.leucine rich repeat XII
2.9
receptor protein kinase
AT5G46080
Q9FNL4
30.2.99
signalling.receptor kinases.misc
3.9
serine/threonine protein kinase-like protein
AT5G44990
Q9FL98
35.2
not assigned.unknown
5.3
putative protein strong similarity to unknown protein (pir||T04769)
AT5G44400
Q9FKU8
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
2
berberine bridge enzyme
AT3G56880
Q9LES0
35.1
not assigned.no ontology
2.6
putative protein predicted protein At2g41010 - Arabidopsis thaliana, EMBL:AC004261;supported by full-length cDNA: Ceres:39584.
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