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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT5G51830
Q9FLH8
2.2.1.1
major CHO metabolism.degradation.sucrose.fructokinase
6.7
fructokinase 1 ; supported by cDNA: gi_13878052_gb_AF370289.1_AF370289
AT5G51440
Q9FGM9
20.2.1
stress.abiotic.heat
3.4
mitochondrial heat shock 22 kd protein-like ; supported by full-length cDNA: Ceres: 268536.
AT5G51070
P42762
29.5.5
protein.degradation.serine protease
2.7
ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana]
AT5G50460
P0DI75
29.3.4.99
protein.targeting.secretory pathway.unspecified
2.1
protein translocation complex Sec61 gamma chain (pir |T05513) ; supported by cDNA: gi_13877812_gb_AF370169.1_AF370169
AT5G50210
Q9FGS4
18.7
Co-factor and vitamine metabolism.iron-sulphur clusters
2.8
putative protein similar to unknown protein (gb|AAF26953.1);supported by full-length cDNA: Ceres:15702.
AT5G50200
Q9FGS5
34.4
transport.nitrate
2.7
putative protein similar to unknown protein (pir||T05562); supported by full-length cDNA: Ceres: 158397.
AT5G49520
Q9FGZ4
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
3
putative protein contains similarity to WRKY-type DNA-binding protein
AT5G48540
Q9LV60
35.2
not assigned.unknown
2.2
33 kDa secretory protein-like ; supported by cDNA: gi_15292980_gb_AY050924.1_
AT5G48370
Q9LK77
35.1
not assigned.no ontology
2.1
putative protein contains similarity to acyl-CoA thioesterase
AT5G48380
Q9ASS4
30.2.10
signalling.receptor kinases.leucine rich repeat X
2.2
receptor-like protein kinase ; supported by cDNA: gi_13605826_gb_AF367312.1_AF367312
AT5G47910
Q9FIJ0
20.1.1
stress.biotic.respiratory burst
2.7
respiratory burst oxidase protein ; supported by cDNA: gi_3242788_gb_AF055357.1_AF055357
AT5G47960
Q9FE79
30.5
signalling.G-proteins
2.4
RAS superfamily GTP-binding protein-like ; supported by cDNA: gi_12004622_gb_AF218121.1_AF218121
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