Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT5G51830 | Q9FLH8 | 2.2.1.1 | major CHO metabolism.degradation.sucrose.fructokinase | 6.7 | fructokinase 1 ; supported by cDNA: gi_13878052_gb_AF370289.1_AF370289 |
AT5G51440 | Q9FGM9 | 20.2.1 | stress.abiotic.heat | 3.4 | mitochondrial heat shock 22 kd protein-like ; supported by full-length cDNA: Ceres: 268536. |
AT5G51070 | P42762 | 29.5.5 | protein.degradation.serine protease | 2.7 | ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein precursor identical to ERD1 protein GI:497629, SP:P42762 from [Arabidopsis thaliana] |
AT5G50460 | P0DI75 | 29.3.4.99 | protein.targeting.secretory pathway.unspecified | 2.1 | protein translocation complex Sec61 gamma chain (pir |T05513) ; supported by cDNA: gi_13877812_gb_AF370169.1_AF370169 |
AT5G50210 | Q9FGS4 | 18.7 | Co-factor and vitamine metabolism.iron-sulphur clusters | 2.8 | putative protein similar to unknown protein (gb|AAF26953.1);supported by full-length cDNA: Ceres:15702. |
AT5G50200 | Q9FGS5 | 34.4 | transport.nitrate | 2.7 | putative protein similar to unknown protein (pir||T05562); supported by full-length cDNA: Ceres: 158397. |
AT5G49520 | Q9FGZ4 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 3 | putative protein contains similarity to WRKY-type DNA-binding protein |
AT5G48540 | Q9LV60 | 35.2 | not assigned.unknown | 2.2 | 33 kDa secretory protein-like ; supported by cDNA: gi_15292980_gb_AY050924.1_ |
AT5G48370 | Q9LK77 | 35.1 | not assigned.no ontology | 2.1 | putative protein contains similarity to acyl-CoA thioesterase |
AT5G48380 | Q9ASS4 | 30.2.10 | signalling.receptor kinases.leucine rich repeat X | 2.2 | receptor-like protein kinase ; supported by cDNA: gi_13605826_gb_AF367312.1_AF367312 |
AT5G47910 | Q9FIJ0 | 20.1.1 | stress.biotic.respiratory burst | 2.7 | respiratory burst oxidase protein ; supported by cDNA: gi_3242788_gb_AF055357.1_AF055357 |
AT5G47960 | Q9FE79 | 30.5 | signalling.G-proteins | 2.4 | RAS superfamily GTP-binding protein-like ; supported by cDNA: gi_12004622_gb_AF218121.1_AF218121 |